Factsheet for Bra002194.1-P

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 3
cytosol 2
plasma membrane 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDX92572	Canola	cytosol	92.77	92.77
CDY13929	Canola	cytosol	91.91	91.91
Bra006485.1-P	Field mustard	cytosol	90.17	90.17
AT5G18930.1	Thale cress	cytosol	89.31	89.05
Bra023699.1-P	Field mustard	cytosol	90.75	88.95
VIT_05s0020g02370.t01	Wine grape	cytosol	62.43	61.71
Solyc01g080380.2.1	Tomato	cytosol	58.67	61.52
PGSC0003DMT400081774	Potato	cytosol	58.67	61.52
KRH50975	Soybean	cytosol	59.25	59.25
KRH02157	Soybean	cytosol	60.4	59.21
KRH20949	Soybean	cytosol	58.38	57.71
KRH11332	Soybean	cytosol	58.38	57.71
PGSC0003DMT400079043	Potato	cytosol	55.2	56.85
GSMUA_Achr11P...	Banana	cytosol	54.91	55.56
GSMUA_Achr3P22890_001	Banana	cytosol	53.76	55.52
Solyc06g054460.1.1	Tomato	cytosol	54.05	55.33
Os05t0141800-00	Rice	cytosol	46.82	45.13
Bra008662.1-P	Field mustard	cytosol	40.46	38.04
Bra039176.1-P	Field mustard	cytosol	39.6	37.64
Bra006334.1-P	Field mustard	cytosol	31.5	36.09
Bra021271.1-P	Field mustard	cytosol	32.08	33.95
Bra021458.1-P	Field mustard	nucleus	39.88	32.17
Bra001046.1-P	Field mustard	nucleus	39.88	31.08

Protein Annotations

KEGG:00270+4.1.1.50	KEGG:00330+4.1.1.50	Gene3D:3.30.360.50	Gene3D:3.60.90.10	MapMan:8.2.1	EnsemblPlantsGene:Bra002194
EnsemblPlants:Bra002194.1	EnsemblPlants:Bra002194.1-P	GO:GO:0003674	GO:GO:0003824	GO:GO:0004014	GO:GO:0006139
GO:GO:0006557	GO:GO:0006596	GO:GO:0006597	GO:GO:0008150	GO:GO:0008152	GO:GO:0008295
GO:GO:0009058	GO:GO:0009987	GO:GO:0016829	GO:GO:0016831	UniProt:M4CDB3	PFAM:PF01536
PIRSF:PIRSF001355	ScanProsite:PS01336	PANTHER:PTHR11570	PANTHER:PTHR11570:SF1	InterPro:S-AdoMet_deCO2ase_CS	InterPro:S-AdoMet_deCO2ase_core
InterPro:S-AdoMet_decarboxylase	SUPFAM:SSF56276	TIGRFAMs:TIGR00535	UniParc:UPI0002545365	:	:

Description

AT5G18930 (E=1e-176) BUD2, SAMDC4 | BUD2 (BUSHY AND DWARF 2); adenosylmethionine decarboxylase

Coordinates

chrA10:+:10972055..10973095

Molecular Weight (calculated)

38673.8 Da

IEP (calculated)

5.286

GRAVY (calculated)

-0.210

Length

346 amino acids

Sequence
(BLAST)

001: MAVSGFEGFE KRLELRFFND SITNNNPMGL RLIDFESLDQ VLNEVQCTVV SAVANHSFDA YVLSESSLFI YPTKIIIKTC GTTQLLKSIR PLIHLARNVN
101: LTLRACRYSR GSFIFPNSQP FPYTSFEDEV VIVEESLPKS LRYRKASVMT PSNSNPSRAW HVFTASADVE PDESLVVVEV CMTELDRVNA RSFFRRKGDE
201: GNSDSAGKEM TRLSGIDMIN ANAFICDFAF DPCGYSMNGV DGDRYSTIHV TPEDGFSYAS FECGLSLYDG GQGDIAEVLA RAIDVFRPGC VSIATTYNGE
301: DYDHEVTKRV ERVLAKKLGL KCRSRLMDEF PGSGTVVYQS FTPRRK

Best Arabidopsis Sequence Match ( AT5G18930.1 )
(BLAST)

001: MAVSGFEGFE KRLELRFFDD DKPITKNPMG LRLIDFESLD QVLNEVQCTV VSAVANRSFD AYVLSESSLF VYPTKIIIKT CGTTQLLKSI RPLIHLARNL
101: GLTLRACRYS RGSFIFPKAQ PFPYTSFKDE VIVVEESLPK SLCYRKASVM TPSNNPSRAW HVFTASADVE SDEHVVVVEV CMTELDRVNA RSFFKRKGDE
201: KNNSDSAGKE MTRLSGIDNI NANAYICDFA FDPCGYSMNG VDGDRYSTIH VTPEDGFSYA SFECGLSLYD NGHEDISEVL SRAIDVFRPS DVSIATTYGG
301: EDYNHEVTKR VERVLAKKLD LKCRSRLMDE FPGSGTVVYQ SFTPRRK

Arabidopsis Description

SAMDC4S-adenosylmethionine decarboxylase proenzyme 4 [Source:UniProtKB/Swiss-Prot;Acc:Q3E9D5]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.