Factsheet for VIT_05s0020g02370.t01

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 2
cytosol 3
plasma membrane 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc01g080380.2.1	Tomato	cytosol	69.71	73.94
PGSC0003DMT400081774	Potato	cytosol	69.71	73.94
PGSC0003DMT400079043	Potato	cytosol	69.14	72.02
KRH50975	Soybean	cytosol	68.29	69.08
KRH11332	Soybean	cytosol	68.86	68.86
Solyc06g054460.1.1	Tomato	cytosol	66.29	68.64
KRH20949	Soybean	cytosol	68.0	68.0
KRH02157	Soybean	cytosol	67.43	66.86
AT5G18930.1	Thale cress	cytosol	63.14	63.69
Bra023699.1-P	Field mustard	cytosol	63.14	62.61
Bra002194.1-P	Field mustard	cytosol	61.71	62.43
CDX88906	Canola	cytosol	61.71	62.25
Bra006485.1-P	Field mustard	cytosol	61.14	61.85
CDX70856	Canola	cytosol	61.14	61.67
GSMUA_Achr3P22890_001	Banana	cytosol	58.57	61.19
CDY13929	Canola	cytosol	60.29	60.98
CDX92572	Canola	cytosol	60.29	60.98
GSMUA_Achr11P...	Banana	cytosol	59.43	60.82
CDY47189	Canola	cytosol	59.43	59.77
Os05t0141800-00	Rice	cytosol	49.71	48.47
VIT_01s0010g00990.t01	Wine grape	cytosol	42.57	41.39
VIT_11s0037g00950.t01	Wine grape	cytosol	41.71	37.73
VIT_14s0083g00580.t01	Wine grape	cytosol	42.86	37.04

Protein Annotations

KEGG:00270+4.1.1.50	KEGG:00330+4.1.1.50	EntrezGene:100261356	wikigene:100261356	Gene3D:3.30.360.50	Gene3D:3.60.90.10
MapMan:8.2.1	EMBL:AM450267	ProteinID:CAN76568	ProteinID:CAN76568.1	ProteinID:CCB50371	ProteinID:CCB50371.1
UniProt:F6HDK0	EMBL:FN595749	GO:GO:0003674	GO:GO:0003824	GO:GO:0004014	GO:GO:0005575
GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0005829	GO:GO:0006139	GO:GO:0006557
GO:GO:0006596	GO:GO:0006597	GO:GO:0008150	GO:GO:0008152	GO:GO:0008295	GO:GO:0009058
GO:GO:0009987	GO:GO:0016829	GO:GO:0016831	EntrezGene:LOC100261356	wikigene:LOC100261356	PFAM:PF01536
PIRSF:PIRSF001355	ScanProsite:PS01336	PANTHER:PTHR11570	PANTHER:PTHR11570:SF1	InterPro:S-AdoMet_deCO2ase_CS	InterPro:S-AdoMet_deCO2ase_core
InterPro:S-AdoMet_decarboxylase	SUPFAM:SSF56276	TIGRFAMs:TIGR00535	UniParc:UPI00015C7FA1	ArrayExpress:VIT_05s0020g02370	EnsemblPlantsGene:VIT_05s0020g02370
EnsemblPlants:VIT_05s0020g02370.t01	RefSeq:XP_002277316	RefSeq:XP_002277316.1	SEG:seg	:	:

Description

S-adenosylmethionine decarboxylase proenzyme [Source:UniProtKB/TrEMBL;Acc:F6HDK0]

Coordinates

chr5:-:4064577..4065684

Molecular Weight (calculated)

38902.8 Da

IEP (calculated)

6.384

GRAVY (calculated)

-0.032

Length

350 amino acids

Sequence
(BLAST)

001: MAVSGFEGFE KRLELHFSGD DPVVGMGLRH LDFESLEQVL HAVQCTVVSA VGNHYFDAYV LSESSLFVYP TKIIIKTCGT TQLLKSIPPL LHHGRHLGLA
101: MCGCRYTRGS FIFPKAQPFP HTSFRDEVIY LEQSLPSTLC YRKASVMPSK MSSHSWHVFS ASDEPHMVLQ HMPDVLYTLE VCMTDLDRVL ARKFFLRPGA
201: GKAGDVAGKE MTELTGIGDI NPGALICDFA FDPCGYSMNG IDGDRYSTIH VTPEDGYSYA SFECVGSIYD DQNDVVQVLK KVVQVFRPAT MSVSTTCTSH
301: EVWTRVATAL EPMGLKCRSC AVDEFPAAGS MVFQTFTTRR KEKRLVEVDM

Best Arabidopsis Sequence Match ( AT5G18930.1 )
(BLAST)

001: MAVSGFEGFE KRLELRFFDD DKPITKNPMG LRLIDFESLD QVLNEVQCTV VSAVANRSFD AYVLSESSLF VYPTKIIIKT CGTTQLLKSI RPLIHLARNL
101: GLTLRACRYS RGSFIFPKAQ PFPYTSFKDE VIVVEESLPK SLCYRKASVM TPSNNPSRAW HVFTASADVE SDEHVVVVEV CMTELDRVNA RSFFKRKGDE
201: KNNSDSAGKE MTRLSGIDNI NANAYICDFA FDPCGYSMNG VDGDRYSTIH VTPEDGFSYA SFECGLSLYD NGHEDISEVL SRAIDVFRPS DVSIATTYGG
301: EDYNHEVTKR VERVLAKKLD LKCRSRLMDE FPGSGTVVYQ SFTPRRK

Arabidopsis Description

SAMDC4S-adenosylmethionine decarboxylase proenzyme 4 [Source:UniProtKB/Swiss-Prot;Acc:Q3E9D5]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.