Factsheet for VIT_11s0037g00950.t01

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 2
plastid 1
cytosol 3
plasma membrane 1
mitochondrion 1
peroxisome 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH02991	Soybean	cytosol	54.01	58.38
GSMUA_Achr9P13400_001	Banana	cytosol	53.75	57.78
GSMUA_Achr7P19450_001	Banana	cytosol, plastid	56.33	56.92
GSMUA_Achr5P24230_001	Banana	cytosol, peroxisome, plastid	58.14	56.82
VIT_01s0010g00990.t01	Wine grape	cytosol	51.94	55.83
Os09t0424300-03	Rice	cytosol	55.81	55.1
Zm00001d051056_P001	Maize	plastid	55.81	54.68
Os02t0611200-01	Rice	cytosol	55.81	54.68
EER98924	Sorghum	cytosol	55.56	54.43
GSMUA_Achr3P04790_001	Banana	cytosol	52.45	54.42
TraesCS5D01G228900.1	Wheat	cytosol, nucleus, peroxisome	55.04	54.34
TraesCS5B01G220000.1	Wheat	cytosol, nucleus, peroxisome	55.04	54.34
TraesCS6B01G249000.1	Wheat	cytosol	54.26	54.12
TraesCS6D01G202500.1	Wheat	cytosol	53.75	53.61
Os04t0498600-01	Rice	cytosol	55.04	53.52
HORVU6Hr1G056110.1	Barley	cytosol	53.75	53.47
TraesCS6A01G219500.1	Wheat	cytosol	53.49	53.35
TraesCS2B01G372900.1	Wheat	cytosol	53.75	53.2
Zm00001d025773_P002	Maize	cytosol, plastid	54.01	53.18
TraesCS5A01G221200.1	Wheat	cytosol	54.01	53.05
Zm00001d003157_P001	Maize	cytosol	54.78	53.0
EES05409	Sorghum	plastid	54.26	52.76
Zm00001d020543_P001	Maize	cytosol	53.23	52.55
TraesCS2D01G352900.1	Wheat	cytosol	52.71	49.88
TraesCS2A01G355400.1	Wheat	cytosol, endoplasmic reticulum, extracellular, golgi, peroxisome, plasma membrane, plastid, vacuole	52.97	49.4
HORVU5Hr1G064040.8	Barley	cytosol	55.3	48.42
OQU81878	Sorghum	cytosol	55.3	47.03
VIT_14s0083g00580.t01	Wine grape	cytosol	49.1	46.91
HORVU2Hr1G086140.5	Barley	cytosol	53.23	45.78
VIT_05s0020g02370.t01	Wine grape	cytosol	37.73	41.71

Protein Annotations

KEGG:00270+4.1.1.50	KEGG:00330+4.1.1.50	EntrezGene:100241620	wikigene:100241620	EntrezGene:104877289	Gene3D:3.30.360.50
Gene3D:3.60.90.10	MapMan:8.2.1	EMBL:AM461265	ProteinID:CAN76946	ProteinID:CAN76946.1	ProteinID:CCB59794
ProteinID:CCB59794.1	UniProt:F6HYN0	EMBL:FN596499	GO:GO:0003674	GO:GO:0003824	GO:GO:0004014
GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0005829	GO:GO:0006139
GO:GO:0006557	GO:GO:0006596	GO:GO:0006597	GO:GO:0008150	GO:GO:0008152	GO:GO:0008295
GO:GO:0009058	GO:GO:0009987	GO:GO:0016829	GO:GO:0016831	EntrezGene:LOC100241620	wikigene:LOC100241620
PFAM:PF01536	PIRSF:PIRSF001355	ScanProsite:PS01336	PANTHER:PTHR11570	PANTHER:PTHR11570:SF15	InterPro:S-AdoMet_deCO2ase_CS
InterPro:S-AdoMet_deCO2ase_core	InterPro:S-AdoMet_decarboxylase	SUPFAM:SSF56276	TIGR:TC60022	TIGRFAMs:TIGR00535	UniParc:UPI00015C9608
ArrayExpress:VIT_11s0037g00950	EnsemblPlantsGene:VIT_11s0037g00950	EnsemblPlants:VIT_11s0037g00950.t01	unigene:Vvi.10871	RefSeq:XP_002272179	RefSeq:XP_002272179.2
RefSeq:XP_010656642.2	SEG:seg	:	:	:	:

Description

S-adenosylmethionine decarboxylase proenzyme [Source:UniProtKB/TrEMBL;Acc:F6HYN0]

Coordinates

chr11:+:9740682..9742003

Molecular Weight (calculated)

42026.1 Da

IEP (calculated)

4.422

GRAVY (calculated)

-0.025

Length

387 amino acids

Sequence
(BLAST)

001: MAVLYGTTNG DPPPPSPIGF EGFEKRLQIT FSEAPIFIDP RGLGLRALTR SQLDLILDAA CCTIVNHLSN SELDSYVLSE SSLFVYPNKI ILKTCGTTKL
101: LLSIPPILQL AESLQLTVVS VKYSRGSFIF PNAQPAPHRS FSEEVAALNV FFGDLSPKAY VIGDPAIPNR NWHIYSASKE VRRSPLVREE VAVITVEMCM
201: TGLDRDKASV FFKKSGEEDS AKEMTKLSGI SDVMPTHVIC DFEFDPCGYS MNGVEGGALS TVHVTPEEGF SYASYEAMGF DPGSVGMKTL MKRVLACFGP
301: SQFSVAVTCP AGDDERWAME GCGEVEGYAC QNVVKQELSS GEGCVVYVTY EAEEKGCAVN SPKSVLQCWK DVEVEEGEGE GWVSVSC

Best Arabidopsis Sequence Match ( AT3G02470.3 )
(BLAST)

001: MALSAIGFEG YEKRLEVTFF EPSIFQDSKG LGLRALTKSQ LDEILTPAAC TIVSSLSNDQ LDSYVLSESS FFVYPYKVII KTCGTTKLLL SIPPLLKLAG
101: ELSLSVKSVK YTRGSFLCPG GQPFPHRSFS EEVSVLDGHF TQLGLNSVAY LMGNDDETKK WHVYAASAQD SSNCNNNVYT LEMCMTGLDR EKAAVFYKDE
201: ADKTGSMTDN SGIRKILPKS EICDFEFEPC GYSMNSIEGD AISTIHVTPE DGFSYASFEA VGYDFNTLDL SQLVTRVLSC FEPKQFSVAV HSSVGANSYK
301: PEITVDLEDY GCRERTFESL GEESGTVMYQ TFEKLGKYCG SPRSTLKCEW SSNNSCSSED EKDEGI

Arabidopsis Description

SAMDC1S-adenosylmethionine decarboxylase proenzyme 1 [Source:UniProtKB/Swiss-Prot;Acc:Q96286]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.