CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 2
plastid 2
cytosol 3
plasma membrane 2
extracellular 1
endoplasmic reticulum 1
vacuole 1
golgi 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, nucleus, plastid, secretory
BaCelLo:	nucleus
EpiLoc:	plastid
MultiLoc:	cytosol
Plant-mPloc:	nucleus, plasma membrane, plastid
PProwler:	secretory
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
VIT_11s0037g00950.t01	Wine grape	cytosol	58.38	54.01
GSMUA_Achr9P13400_001	Banana	cytosol	48.88	48.61
KRH75226	Soybean	cytosol	46.93	47.59
GSMUA_Achr7P19450_001	Banana	cytosol, plastid	50.56	47.26
GSMUA_Achr5P24230_001	Banana	cytosol, peroxisome, plastid	51.96	46.97
KRH71078	Soybean	cytosol	46.37	46.76
GSMUA_Achr3P04790_001	Banana	cytosol	48.6	46.65
TraesCS6B01G249000.1	Wheat	cytosol	50.28	46.39
Zm00001d025773_P002	Maize	cytosol, plastid	50.84	46.31
HORVU6Hr1G056110.1	Barley	cytosol	50.28	46.27
Zm00001d003157_P001	Maize	cytosol	51.68	46.25
KRH01466	Soybean	cytosol, golgi, nucleus	46.37	46.24
TraesCS6A01G219500.1	Wheat	cytosol	50.0	46.13
Os02t0611200-01	Rice	cytosol	50.84	46.08
TraesCS6D01G202500.1	Wheat	cytosol	49.72	45.88
Zm00001d051056_P001	Maize	plastid	50.56	45.82
TraesCS2B01G372900.1	Wheat	cytosol	50.0	45.78
EER98924	Sorghum	cytosol	50.28	45.57
EES05409	Sorghum	plastid	50.56	45.48
Os04t0498600-01	Rice	cytosol	50.56	45.48
Os09t0424300-03	Rice	cytosol	49.72	45.41
KRH45175	Soybean	cytosol	45.53	45.4
Zm00001d020543_P001	Maize	cytosol	49.16	44.9
TraesCS5B01G220000.1	Wheat	cytosol, nucleus, peroxisome	48.32	44.13
TraesCS5D01G228900.1	Wheat	cytosol, nucleus, peroxisome	48.32	44.13
TraesCS5A01G221200.1	Wheat	cytosol	48.04	43.65
TraesCS2D01G352900.1	Wheat	cytosol	49.16	43.03
TraesCS2A01G355400.1	Wheat	cytosol, endoplasmic reticulum, extracellular, golgi, peroxisome, plasma membrane, plastid, vacuole	49.44	42.65
HORVU2Hr1G086140.5	Barley	cytosol	50.28	40.0
OQU81878	Sorghum	cytosol	50.56	39.78
HORVU5Hr1G064040.8	Barley	cytosol	48.88	39.59
KRH02157	Soybean	cytosol	38.27	38.81
KRH50975	Soybean	cytosol	37.43	38.73
KRH11332	Soybean	cytosol	37.15	38.0
KRH20949	Soybean	cytosol	36.87	37.71

Protein Annotations

KEGG:00270+4.1.1.50	KEGG:00330+4.1.1.50	EntrezGene:100790347	Gene3D:3.30.360.50	Gene3D:3.60.90.10	MapMan:8.2.1
EMBL:ACUP02010333	EnsemblPlantsGene:GLYMA_17G070500	GO:GO:0003674	GO:GO:0003824	GO:GO:0004014	GO:GO:0005575
GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0005829	GO:GO:0006139	GO:GO:0006557
GO:GO:0006596	GO:GO:0006597	GO:GO:0008150	GO:GO:0008152	GO:GO:0008295	GO:GO:0009058
GO:GO:0009987	GO:GO:0016829	GO:GO:0016831	UniProt:I1MSY8	EnsemblPlants:KRH02991	ProteinID:KRH02991
ProteinID:KRH02991.1	PFAM:PF01536	PIRSF:PIRSF001355	ScanProsite:PS01336	PANTHER:PTHR11570	PANTHER:PTHR11570:SF15
MetaCyc:PWY-6834	InterPro:S-AdoMet_deCO2ase_CS	InterPro:S-AdoMet_deCO2ase_core	InterPro:S-AdoMet_decarboxylase	SUPFAM:SSF56276	TIGRFAMs:TIGR00535
UniParc:UPI000233E3BE	:	:	:	:	:

Description

hypothetical protein

Coordinates

chr17:+:5524596..5526914

Molecular Weight (calculated)

38946.5 Da

IEP (calculated)

5.449

GRAVY (calculated)

0.019

Length

358 amino acids

Sequence
(BLAST)

001: MVESEKTEAG FEGFEKRVEI SFSFSESGEP KKLGLRALSG AQIKSILEAA RCSIVSQLSN SELDSYVLSE SSLFVFPLKI ILKTCGTTRL LLSVKPILDL
101: AASLSLSVFA VKYSRGSFLF PNDQPAPHDT FLNEVALLNH YFAHLNAKAY VIGNPNRCWH LYSACGEAAT LSLTVEICMT GLDRDKARVF HKEWGGGKMT
201: EMSGISEIVQ SHVICDFEFE PCGYSMNGIE GAAFSTVHVT PENGFSYGSY EVQGLDPGSN GFGALVRKVL KCFCPSDFSV AVTCEVGAED WAMSDADVEG
301: YCCQNVVKQQ LLPGKGCLVY RTYSARGRGR GSPKIAIVKC SNEIEKEELV LSSCLTST

Best Arabidopsis Sequence Match ( AT3G02470.1 )
(BLAST)

001: MALSAIGFEG YEKRLEVTFF EPSIFQDSKG LGLRALTKSQ LDEILTPAAC TIVSSLSNDQ LDSYVLSESS FFVYPYKVII KTCGTTKLLL SIPPLLKLAG
101: ELSLSVKSVK YTRGSFLCPG GQPFPHRSFS EEVSVLDGHF TQLGLNSVAY LMGNDDETKK WHVYAASAQD SSNCNNNVYT LEMCMTGLDR EKAAVFYKDE
201: ADKTGSMTDN SGIRKILPKS EICDFEFEPC GYSMNSIEGD AISTIHVTPE DGFSYASFEA VGYDFNTLDL SQLVTRVLSC FEPKQFSVAV HSSVGANSYK
301: PEITVDLEDY GCRERTFESL GEESGTVMYQ TFEKLGKYCG SPRSTLKCEW SSNNSCSSED EKDEGI

Arabidopsis Description

SAMDC1S-adenosylmethionine decarboxylase proenzyme 1 [Source:UniProtKB/Swiss-Prot;Acc:Q96286]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.