Factsheet for Zm00001d020543_P001

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

cytosol 3
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
EER98924	Sorghum	cytosol	89.54	88.86
Os09t0424300-03	Rice	cytosol	76.79	76.79
TraesCS5B01G220000.1	Wheat	cytosol, nucleus, peroxisome	76.28	76.28
TraesCS5A01G221200.1	Wheat	cytosol	76.02	75.63
TraesCS5D01G228900.1	Wheat	cytosol, nucleus, peroxisome	75.26	75.26
HORVU5Hr1G064040.8	Barley	cytosol	76.02	67.42
GSMUA_Achr9P13400_001	Banana	cytosol	60.97	66.39
GSMUA_Achr7P19450_001	Banana	cytosol, plastid	64.03	65.54
GSMUA_Achr3P04790_001	Banana	cytosol	62.24	65.42
GSMUA_Achr5P24230_001	Banana	cytosol, peroxisome, plastid	65.31	64.65
Zm00001d025773_P002	Maize	cytosol, plastid	62.76	62.6
Zm00001d051056_P001	Maize	plastid	62.24	61.77
Zm00001d003157_P001	Maize	cytosol	63.01	61.75
VIT_11s0037g00950.t01	Wine grape	cytosol	52.55	53.23
Solyc01g010050.2.1	Tomato	cytosol	48.21	51.92
CDY57536	Canola	cytosol	47.96	51.65
Bra039176.1-P	Field mustard	cytosol	47.96	51.65
CDX74257	Canola	cytosol	48.47	51.63
CDY71278	Canola	cytosol	47.7	51.52
AT3G02470.1	Thale cress	cytosol	47.96	51.37
AT3G25570.2	Thale cress	cytosol	45.66	51.29
CDX91992	Canola	cytosol	47.96	51.23
PGSC0003DMT400026053	Potato	cytosol	47.19	51.1
PGSC0003DMT400041339	Potato	cytosol	47.19	50.96
Solyc02g089610.1.1	Tomato	cytosol	46.94	50.83
AT5G15950.2	Thale cress	cytosol	46.68	50.55
CDX69487	Canola	cytosol	46.43	49.46
Bra008662.1-P	Field mustard	cytosol	46.43	49.46
PGSC0003DMT400019451	Potato	cytosol	45.15	49.17
KRH02991	Soybean	cytosol	44.9	49.16
CDX70666	Canola	cytosol	45.41	49.04
Solyc05g010420.1.1	Tomato	cytosol	44.9	48.89
CDY26478	Canola	cytosol	45.41	48.5
Bra006334.1-P	Field mustard	cytosol	36.73	47.68
CDX78666	Canola	cytosol	36.48	47.35
AT3G17717.1	Thale cress	cytosol	14.54	44.88
CDY71710	Canola	cytosol, nucleus, plastid	47.45	43.36
Bra021458.1-P	Field mustard	nucleus	47.45	43.36
Bra001046.1-P	Field mustard	nucleus	48.98	43.24
CDY43235	Canola	cytosol, plastid	47.7	40.39
Bra021271.1-P	Field mustard	cytosol	29.59	35.47
CDY49835	Canola	cytosol	29.08	34.86
CDY63462	Canola	plastid	8.16	20.78
CDY33352	Canola	plastid	7.91	20.13
CDY06772	Canola	nucleus	8.16	19.63
CDX99815	Canola	cytosol	7.91	16.85
CDY17081	Canola	cytosol	7.91	16.58

Protein Annotations

KEGG:00270+4.1.1.50	KEGG:00330+4.1.1.50	Gene3D:3.30.360.50	Gene3D:3.60.90.10	MapMan:8.2.1	UniProt:B8A123
EMBL:BT055265	GO:GO:0003674	GO:GO:0003824	GO:GO:0004014	GO:GO:0006597	GO:GO:0008150
GO:GO:0008152	GO:GO:0008295	GO:GO:0009058	GO:GO:0009987	ProteinID:ONM55095.1	PFAM:PF01536
ScanProsite:PS01336	PANTHER:PTHR11570	PANTHER:PTHR11570:SF3	InterPro:S-AdoMet_deCO2ase_CS	InterPro:S-AdoMet_deCO2ase_core	InterPro:S-AdoMet_decarboxylase
SUPFAM:SSF56276	TIGRFAMs:TIGR00535	UniParc:UPI00019177EC	EnsemblPlantsGene:Zm00001d020543	EnsemblPlants:Zm00001d020543_P001	EnsemblPlants:Zm00001d020543_T001
SEG:seg	:	:	:	:	:

Description

S-adenosylmethionine decarboxylase proenzyme

Coordinates

chr7:-:121726371..121727549

Molecular Weight (calculated)

42588.5 Da

IEP (calculated)

4.512

GRAVY (calculated)

-0.059

Length

392 amino acids

Sequence
(BLAST)

001: MSSADSCVSS PASPIGFEGY EKRLEITFSD APVFEDPCGR GLRALSREQI DSFLDLARCT IVSQLSNESF DSYVLSESSL FVYPHKVVLK TCGTTKLLLA
101: IPRILELAAG LSLPLLSAKY SRGTFIFPGA QPAPHRSFSE EVSVLNAFFG NLKSGGNAYL IGEPFKPNKK WHVYYATEEP ERPMVTLEMC MTELDVKKAA
201: VFFKNSTGGS CTSAKEMTKL SGIHEIIPEM EICDFEFDPC GYSMNGVLGP AASTIHVTPE EGFSYASYEA MNFDPSSLVY SDVIRRVLAG FSPSDFSVAV
301: TIFGGRGFAK SWATGADIDS YMCGDPVEQE LPSGGLLMYQ SFTDVPSGSV SPRSTLQTDG WSSDGMEMAS NDEMCIGCWN AVKKVVKKDL DA

Best Arabidopsis Sequence Match ( AT3G02470.3 )
(BLAST)

001: MALSAIGFEG YEKRLEVTFF EPSIFQDSKG LGLRALTKSQ LDEILTPAAC TIVSSLSNDQ LDSYVLSESS FFVYPYKVII KTCGTTKLLL SIPPLLKLAG
101: ELSLSVKSVK YTRGSFLCPG GQPFPHRSFS EEVSVLDGHF TQLGLNSVAY LMGNDDETKK WHVYAASAQD SSNCNNNVYT LEMCMTGLDR EKAAVFYKDE
201: ADKTGSMTDN SGIRKILPKS EICDFEFEPC GYSMNSIEGD AISTIHVTPE DGFSYASFEA VGYDFNTLDL SQLVTRVLSC FEPKQFSVAV HSSVGANSYK
301: PEITVDLEDY GCRERTFESL GEESGTVMYQ TFEKLGKYCG SPRSTLKCEW SSNNSCSSED EKDEGI

Arabidopsis Description

SAMDC1S-adenosylmethionine decarboxylase proenzyme 1 [Source:UniProtKB/Swiss-Prot;Acc:Q96286]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.