CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plastid, nucleus, cytosol

Predictor Summary:

nucleus 2
cytosol 1
mitochondrion 1
plastid 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol, nucleus, plastid
Any Predictor:	cytosol, nucleus, plastid
BaCelLo:	nucleus
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	plastid
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Bra021458.1-P	Field mustard	nucleus	99.53	99.53
CDY71278	Canola	cytosol	83.68	98.9
CDX74257	Canola	cytosol	81.82	95.38
CDX91992	Canola	cytosol	79.72	93.19
AT3G02470.1	Thale cress	cytosol	79.49	93.17
CDY57536	Canola	cytosol	78.09	92.03
CDY43235	Canola	cytosol, plastid	87.65	81.21
CDY26478	Canola	cytosol	69.46	81.2
CDX70666	Canola	cytosol	66.2	78.24
CDX69487	Canola	cytosol	66.9	77.99
CDX78666	Canola	cytosol	52.45	74.5
VIT_14s0083g00580.t01	Wine grape	cytosol	60.61	64.2
KRH01466	Soybean	cytosol, golgi, nucleus	52.91	63.23
Solyc02g089610.1.1	Tomato	cytosol	52.21	61.88
KRH45175	Soybean	cytosol	51.75	61.84
PGSC0003DMT400026053	Potato	cytosol	51.98	61.6
CDY33352	Canola	plastid	18.65	51.95
CDY63462	Canola	plastid	18.41	51.3
GSMUA_Achr9P18460_001	Banana	cytosol	50.12	50.59
HORVU5Hr1G064040.8	Barley	cytosol	50.35	48.87
TraesCS6B01G249000.1	Wheat	cytosol	43.59	48.2
HORVU6Hr1G056110.1	Barley	cytosol	43.59	48.07
TraesCS5B01G220000.1	Wheat	cytosol, nucleus, peroxisome	43.82	47.96
TraesCS6D01G202500.1	Wheat	cytosol	43.36	47.94
TraesCS5D01G228900.1	Wheat	cytosol, nucleus, peroxisome	43.59	47.7
TraesCS6A01G219500.1	Wheat	cytosol	43.12	47.68
Os02t0611200-01	Rice	cytosol	43.82	47.59
EER98924	Sorghum	cytosol	43.82	47.59
TraesCS5A01G221200.1	Wheat	cytosol	43.59	47.46
Zm00001d020543_P001	Maize	cytosol	43.36	47.45
Os09t0424300-03	Rice	cytosol	43.36	47.45
TraesCS2D01G352900.1	Wheat	cytosol	44.99	47.19
Zm00001d025773_P002	Maize	cytosol, plastid	42.89	46.82
OQU81878	Sorghum	cytosol	49.42	46.59
TraesCS2B01G372900.1	Wheat	cytosol	42.42	46.55
EES05409	Sorghum	plastid	43.12	46.48
HORVU2Hr1G086140.5	Barley	cytosol	48.72	46.44
Os04t0498600-01	Rice	cytosol	42.66	45.98
Zm00001d051056_P001	Maize	plastid	42.19	45.82
Zm00001d003157_P001	Maize	cytosol	42.19	45.25
TraesCS2A01G355400.1	Wheat	cytosol, endoplasmic reticulum, extracellular, golgi, peroxisome, plasma membrane, plastid, vacuole	42.42	43.86
CDY06772	Canola	nucleus	16.32	42.94
CDX99815	Canola	cytosol	18.41	42.93
CDY17081	Canola	cytosol	18.41	42.25
CDY49835	Canola	cytosol	32.17	42.2
CDX92572	Canola	cytosol	32.63	40.46
CDX70856	Canola	cytosol	32.4	40.06
CDY13929	Canola	cytosol	32.17	39.88
CDX88906	Canola	cytosol	31.93	39.48
CDY47189	Canola	cytosol	31.7	39.08
CDY54323	Canola	cytosol, nucleus, plastid	6.76	26.13
CDX85819	Canola	cytosol	7.46	25.0
CDX84130	Canola	cytosol	4.43	15.2

Protein Annotations

KEGG:00270+4.1.1.50	KEGG:00330+4.1.1.50	Gene3D:3.30.360.50	Gene3D:3.60.90.10	MapMan:8.2.1	GO:A0A078JZ94
UniProt:A0A078JZ94	InterPro:AdoMetDC_leader	EnsemblPlants:CDY71710	ProteinID:CDY71710	ProteinID:CDY71710.1	GO:GO:0003674
GO:GO:0003824	GO:GO:0004014	GO:GO:0006139	GO:GO:0006557	GO:GO:0006596	GO:GO:0006597
GO:GO:0008150	GO:GO:0008152	GO:GO:0008295	GO:GO:0009058	GO:GO:0009987	GO:GO:0016829
GO:GO:0016831	EnsemblPlantsGene:GSBRNA2T00019541001	PFAM:PF01536	PFAM:PF08132	PIRSF:PIRSF001355	ScanProsite:PS01336
PANTHER:PTHR11570	PANTHER:PTHR11570:SF14	MetaCyc:PWY-6834	InterPro:S-AdoMet_deCO2ase_CS	InterPro:S-AdoMet_deCO2ase_core	InterPro:S-AdoMet_decarboxylase
SUPFAM:SSF56276	TIGRFAMs:TIGR00535	UniPathway:UPA00331	UniParc:UPI0004EE8D2A	SEG:seg	:

Description

BnaAnng38530DBnaAnng38530D protein [Source:UniProtKB/TrEMBL;Acc:A0A078JZ94]

Coordinates

chrLK047054:-:193..2272

Molecular Weight (calculated)

47213.6 Da

IEP (calculated)

4.789

GRAVY (calculated)

-0.260

Length

429 amino acids

Sequence
(BLAST)

001: MMESKGGKKK SSSSSSSLFY EAPLGYSIED VRPNGGIKKF KSSVYSNLRF CLVPQSNRSL LLLQGDMALS AIGFEGYEKR LEVSFFEPSI FQDSKGLGLR
101: ALTRSQLDEI LTPAACEIVS SLSNDHLDSY VLSESSFFVY PYKVIIKTCG TTKLLLSIPP LLKLAGELSL SVESVKYTRG SFLCPGGQPF PHRSFSEEVS
201: VLDGHFTKLG LNSVAYLMGN DDETKKWHVY AASSAQSSSN NNVYTLEMCM TGLDREKASV FYKNGETGSM TDNSGIRKIL PQSQICDFEF EPCGYSMNSI
301: EGDAISTIHV TPEDGFSYAS FEAVGYDFNT IDLSQLVTRV LSCFEPKQFS VAVHSSVGVN AYKPEISVDL EDYGCRERTF ESLGEESGTV MYQTFEKLGK
401: YCGSPRSTLK CGWSSNNSCS SEDEKDEGI

Best Arabidopsis Sequence Match ( AT3G02470.3 )
(BLAST)

001: MALSAIGFEG YEKRLEVTFF EPSIFQDSKG LGLRALTKSQ LDEILTPAAC TIVSSLSNDQ LDSYVLSESS FFVYPYKVII KTCGTTKLLL SIPPLLKLAG
101: ELSLSVKSVK YTRGSFLCPG GQPFPHRSFS EEVSVLDGHF TQLGLNSVAY LMGNDDETKK WHVYAASAQD SSNCNNNVYT LEMCMTGLDR EKAAVFYKDE
201: ADKTGSMTDN SGIRKILPKS EICDFEFEPC GYSMNSIEGD AISTIHVTPE DGFSYASFEA VGYDFNTLDL SQLVTRVLSC FEPKQFSVAV HSSVGANSYK
301: PEITVDLEDY GCRERTFESL GEESGTVMYQ TFEKLGKYCG SPRSTLKCEW SSNNSCSSED EKDEGI

Arabidopsis Description

SAMDC1S-adenosylmethionine decarboxylase proenzyme 1 [Source:UniProtKB/Swiss-Prot;Acc:Q96286]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.