Subcellular Localization
min:
: max
Winner_takes_all: plastid, nucleus, cytosol
Predictor Summary:
Predictor Summary:
- nucleus 2
- cytosol 1
- mitochondrion 1
- plastid 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDX85819 | Canola | cytosol | 75.68 | 65.62 |
| CDX78666 | Canola | cytosol | 22.52 | 8.28 |
| CDX70666 | Canola | cytosol | 27.03 | 8.26 |
| CDX84130 | Canola | cytosol | 9.01 | 8.0 |
| CDY57536 | Canola | cytosol | 26.13 | 7.97 |
| CDY71278 | Canola | cytosol | 25.23 | 7.71 |
| CDY26478 | Canola | cytosol | 25.23 | 7.63 |
| CDX74257 | Canola | cytosol | 25.23 | 7.61 |
| CDX91992 | Canola | cytosol | 24.32 | 7.36 |
| CDX69487 | Canola | cytosol | 24.32 | 7.34 |
| CDY71710 | Canola | cytosol, nucleus, plastid | 26.13 | 6.76 |
| CDY49835 | Canola | cytosol | 19.82 | 6.73 |
| CDY47189 | Canola | cytosol | 20.72 | 6.61 |
| CDY43235 | Canola | cytosol, plastid | 26.13 | 6.26 |
| CDX88906 | Canola | cytosol | 18.92 | 6.05 |
| CDX70856 | Canola | cytosol | 18.92 | 6.05 |
| CDY13929 | Canola | cytosol | 18.02 | 5.78 |
| CDX92572 | Canola | cytosol | 17.12 | 5.49 |
| CDY33352 | Canola | plastid | 5.41 | 3.9 |
| CDY63462 | Canola | plastid | 5.41 | 3.9 |
| CDY17081 | Canola | cytosol | 6.31 | 3.74 |
| CDY06772 | Canola | nucleus | 5.41 | 3.68 |
| CDX99815 | Canola | cytosol | 5.41 | 3.26 |
Protein Annotations
| EnsemblPlants:CDY54323 | EnsemblPlantsGene:GSBRNA2T00013826001 | InterPro:AdoMetDC_leader | PANTHER:PTHR35727 | PANTHER:PTHR35727:SF5 | PFAM:PF08132 |
| ProteinID:CDY54323 | ProteinID:CDY54323.1 | SEG:seg | UniParc:UPI0004EEB570 | UniProt:A0A078IYV4 | MapMan:35.2 |
Description
BnaCnng26690DBnaCnng26690D protein [Source:UniProtKB/TrEMBL;Acc:A0A078IYV4]
Coordinates
chrLK033304:-:24373..25899
Molecular Weight (calculated)
12281.5 Da
IEP (calculated)
10.411
GRAVY (calculated)
-0.446
Length
111 amino acids
Sequence
(BLAST)
(BLAST)
001: MESKYGKKKS SSSSSSLFYE APLGYSIEDV RPNGGIKKFK SLSTPTALRG HPDSVSAWFP NPIVLSSYYN FKQQGDMALS AIGFEVTRSR PRSHSLSLAS
101: FKTPRDWVSV L
101: FKTPRDWVSV L
001: MYLLLYVDDI LLTGSSNTLL NMLIFQLSST FSMKDLGPVH YFLGIQIKTH PSGLFLSQTK YAEQILNNAG MLDCKPMSTP LPLKLNSSVS TAKYPDPSDF
101: RSIVGALQYL TLTRPDISYA VNIVCQRMHE PTLADFDLLK RVLRYVKGTI FHGLYIHKNS KLNVQAFCDS DWAGCTSTRR STTGFCTFLG CNIISWSAKR
201: QPTVSRSSTE TEYRALALTA AELTWSSASR SRDPSAMNTN
101: RSIVGALQYL TLTRPDISYA VNIVCQRMHE PTLADFDLLK RVLRYVKGTI FHGLYIHKNS KLNVQAFCDS DWAGCTSTRR STTGFCTFLG CNIISWSAKR
201: QPTVSRSSTE TEYRALALTA AELTWSSASR SRDPSAMNTN
Arabidopsis Description
ORF240BUncharacterized mitochondrial protein AtMg00810 [Source:UniProtKB/Swiss-Prot;Acc:P92519]
SUBAcon: [vacuole,plastid,extracellular,nucleus]
SUBAcon: [vacuole,plastid,extracellular,nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.