Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 3
- cytosol 1
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY63462 | Canola | plastid | 85.28 | 90.26 |
| CDY33352 | Canola | plastid | 81.6 | 86.36 |
| CDX99815 | Canola | cytosol | 88.34 | 78.26 |
| CDY17081 | Canola | cytosol | 87.73 | 76.47 |
| CDY71710 | Canola | cytosol, nucleus, plastid | 42.94 | 16.32 |
| VIT_14s0083g00580.t01 | Wine grape | cytosol | 33.13 | 13.33 |
| CDY43235 | Canola | cytosol, plastid | 37.42 | 13.17 |
| CDY71278 | Canola | cytosol | 25.77 | 11.57 |
| CDY57536 | Canola | cytosol | 25.77 | 11.54 |
| CDX91992 | Canola | cytosol | 25.77 | 11.44 |
| CDX74257 | Canola | cytosol | 25.77 | 11.41 |
| AT3G02470.1 | Thale cress | cytosol | 23.93 | 10.66 |
| CDX78666 | Canola | cytosol | 19.63 | 10.6 |
| HORVU5Hr1G064040.8 | Barley | cytosol | 28.22 | 10.41 |
| HORVU2Hr1G086140.5 | Barley | cytosol | 28.22 | 10.22 |
| OQU81878 | Sorghum | cytosol | 28.22 | 10.11 |
| KRH01466 | Soybean | cytosol, golgi, nucleus | 21.47 | 9.75 |
| CDX70666 | Canola | cytosol | 20.86 | 9.37 |
| TraesCS2D01G352900.1 | Wheat | cytosol | 23.31 | 9.29 |
| KRH45175 | Soybean | cytosol | 20.25 | 9.19 |
| CDY26478 | Canola | cytosol | 20.25 | 8.99 |
| CDX69487 | Canola | cytosol | 20.25 | 8.97 |
| PGSC0003DMT400026053 | Potato | cytosol | 19.63 | 8.84 |
| Solyc02g089610.1.1 | Tomato | cytosol | 19.63 | 8.84 |
| Os09t0424300-03 | Rice | cytosol | 19.63 | 8.16 |
| Zm00001d020543_P001 | Maize | cytosol | 19.63 | 8.16 |
| EER98924 | Sorghum | cytosol | 19.63 | 8.1 |
| GSMUA_Achr9P18460_001 | Banana | cytosol | 20.86 | 8.0 |
| TraesCS6D01G202500.1 | Wheat | cytosol | 19.02 | 7.99 |
| TraesCS6B01G249000.1 | Wheat | cytosol | 19.02 | 7.99 |
| HORVU6Hr1G056110.1 | Barley | cytosol | 19.02 | 7.97 |
| TraesCS5D01G228900.1 | Wheat | cytosol, nucleus, peroxisome | 19.02 | 7.91 |
| TraesCS5B01G220000.1 | Wheat | cytosol, nucleus, peroxisome | 19.02 | 7.91 |
| Os02t0611200-01 | Rice | cytosol | 19.02 | 7.85 |
| TraesCS6A01G219500.1 | Wheat | cytosol | 18.4 | 7.73 |
| Zm00001d025773_P002 | Maize | cytosol, plastid | 18.4 | 7.63 |
| TraesCS5A01G221200.1 | Wheat | cytosol | 18.4 | 7.61 |
| Zm00001d051056_P001 | Maize | plastid | 18.4 | 7.59 |
| EES05409 | Sorghum | plastid | 18.4 | 7.54 |
| Zm00001d003157_P001 | Maize | cytosol | 18.4 | 7.5 |
| Os04t0498600-01 | Rice | cytosol | 17.18 | 7.04 |
| CDX92572 | Canola | cytosol | 14.72 | 6.94 |
| CDX88906 | Canola | cytosol | 14.72 | 6.92 |
| CDX70856 | Canola | cytosol | 14.72 | 6.92 |
| TraesCS2B01G372900.1 | Wheat | cytosol | 16.56 | 6.91 |
| TraesCS2A01G355400.1 | Wheat | cytosol, endoplasmic reticulum, extracellular, golgi, peroxisome, plasma membrane, plastid, vacuole | 17.18 | 6.75 |
| CDY13929 | Canola | cytosol | 14.11 | 6.65 |
| CDY47189 | Canola | cytosol | 12.88 | 6.03 |
| CDY49835 | Canola | cytosol | 11.04 | 5.5 |
| CDX85819 | Canola | cytosol | 4.29 | 5.47 |
| CDY54323 | Canola | cytosol, nucleus, plastid | 3.68 | 5.41 |
| CDX84130 | Canola | cytosol | 3.07 | 4.0 |
Protein Annotations
| KEGG:00270+4.1.1.50 | KEGG:00330+4.1.1.50 | Gene3D:3.60.90.10 | MapMan:8.2.1 | GO:A0A078F0V3 | InterPro:AdoMetDC_leader |
| EnsemblPlants:CDY06772 | ProteinID:CDY06772 | ProteinID:CDY06772.1 | GO:GO:0003674 | GO:GO:0003824 | GO:GO:0004014 |
| GO:GO:0006597 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0008295 | GO:GO:0009058 | GO:GO:0009987 |
| EnsemblPlantsGene:GSBRNA2T00123001001 | PFAM:PF01536 | PFAM:PF08132 | PANTHER:PTHR11570 | PANTHER:PTHR11570:SF14 | MetaCyc:PWY-6834 |
| InterPro:S-AdoMet_deCO2ase_core | InterPro:S-AdoMet_decarboxylase | SUPFAM:SSF56276 | UniPathway:UPA00331 | UniParc:UPI0004EF28D2 | SEG:seg |
Description
BnaC01g08710D
Coordinates
chrLK031973:-:58064..59317
Molecular Weight (calculated)
18181.6 Da
IEP (calculated)
7.500
GRAVY (calculated)
-0.183
Length
163 amino acids
Sequence
(BLAST)
(BLAST)
001: MPPFLFEDSR ESVNEIVMES KYGKKKSSSS SSSLFYEAPL GYSIEDKFKS LSTPTALRGH PDSVSAWFPN PIVLSSYYKF RQQGDMALSA IGFEFTRSRP
101: RSQLDKIHTP AACEIVSSLS NDHFDSCVLS ESSFFVYPYK VIINTCGTTK LLLSMPHLLN LAG
101: RSQLDKIHTP AACEIVSSLS NDHFDSCVLS ESSFFVYPYK VIINTCGTTK LLLSMPHLLN LAG
001: MALSAIGFEG YEKRLEVTFF EPSIFQDSKG LGLRALTKSQ LDEILTPAAC TIVSSLSNDQ LDSYVLSESS FFVYPYKVII KTCGTTKLLL SIPPLLKLAG
101: ELSLSVKSVK YTRGSFLCPG GQPFPHRSFS EEVSVLDGHF TQLGLNSVAY LMGNDDETKK WHVYAASAQD SSNCNNNVYT LEMCMTGLDR EKAAVFYKDE
201: ADKTGSMTDN SGIRKILPKS EICDFEFEPC GYSMNSIEGD AISTIHVTPE DGFSYASFEA VGYDFNTLDL SQLVTRVLSC FEPKQFSVAV HSSVGANSYK
301: PEITVDLEDY GCRERTFESL GEESGTVMYQ TFEKLGKYCG SPRSTLKCEW SSNNSCSSED EKDEGI
101: ELSLSVKSVK YTRGSFLCPG GQPFPHRSFS EEVSVLDGHF TQLGLNSVAY LMGNDDETKK WHVYAASAQD SSNCNNNVYT LEMCMTGLDR EKAAVFYKDE
201: ADKTGSMTDN SGIRKILPKS EICDFEFEPC GYSMNSIEGD AISTIHVTPE DGFSYASFEA VGYDFNTLDL SQLVTRVLSC FEPKQFSVAV HSSVGANSYK
301: PEITVDLEDY GCRERTFESL GEESGTVMYQ TFEKLGKYCG SPRSTLKCEW SSNNSCSSED EKDEGI
Arabidopsis Description
SAMDC1S-adenosylmethionine decarboxylase proenzyme 1 [Source:UniProtKB/Swiss-Prot;Acc:Q96286]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.