Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- nucleus 2
- cytosol 2
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY54323 | Canola | cytosol, nucleus, plastid | 65.62 | 75.68 |
| CDX78666 | Canola | cytosol | 21.09 | 8.94 |
| CDX70666 | Canola | cytosol | 24.22 | 8.54 |
| CDY71278 | Canola | cytosol | 24.22 | 8.54 |
| CDX74257 | Canola | cytosol | 24.22 | 8.42 |
| CDY57536 | Canola | cytosol | 23.44 | 8.24 |
| CDY26478 | Canola | cytosol | 23.44 | 8.17 |
| CDX91992 | Canola | cytosol | 22.66 | 7.9 |
| CDX69487 | Canola | cytosol | 22.66 | 7.88 |
| CDY71710 | Canola | cytosol, nucleus, plastid | 25.0 | 7.46 |
| CDY49835 | Canola | cytosol | 17.97 | 7.03 |
| CDY13929 | Canola | cytosol | 18.75 | 6.94 |
| CDX88906 | Canola | cytosol | 18.75 | 6.92 |
| CDX70856 | Canola | cytosol | 18.75 | 6.92 |
| CDY47189 | Canola | cytosol | 18.75 | 6.9 |
| CDY43235 | Canola | cytosol, plastid | 23.44 | 6.48 |
| CDX84130 | Canola | cytosol | 6.25 | 6.4 |
| CDX92572 | Canola | cytosol | 17.19 | 6.36 |
| CDY33352 | Canola | plastid | 6.25 | 5.19 |
| CDY63462 | Canola | plastid | 6.25 | 5.19 |
| CDY06772 | Canola | nucleus | 5.47 | 4.29 |
| CDY17081 | Canola | cytosol | 6.25 | 4.28 |
| CDX99815 | Canola | cytosol | 5.47 | 3.8 |
Protein Annotations
| EnsemblPlants:CDX85819 | EnsemblPlantsGene:GSBRNA2T00143588001 | InterPro:AdoMetDC_leader | PANTHER:PTHR35727 | PFAM:PF08132 | ProteinID:CDX85819 |
| ProteinID:CDX85819.1 | SEG:seg | UniParc:UPI0004EE3F2D | MapMan:35.2 | : | : |
Description
BnaC06g23150D
Coordinates
chrLK031843:+:39997..41066
Molecular Weight (calculated)
14277.0 Da
IEP (calculated)
10.074
GRAVY (calculated)
-0.353
Length
128 amino acids
Sequence
(BLAST)
(BLAST)
001: MPPFLFEDSR ESVNEIVMES KYGKKKSSSS SSSLFYEAPL GYSIEDVRPN GGIKKFKSLS TPTALRGHPD SVSAWFPNPI VLSSYYKFKQ QGDMALSAIG
101: FEVTRSRPRS LSLSLASFKT PRDWVSIL
101: FEVTRSRPRS LSLSLASFKT PRDWVSIL
001: MDDERIRERE RLQIEQIREL DFEELQVEEV DDLHDSDSDD NNDDLSSFPF SSHAQASGNL GDDELMFNPA LASLHMYLGE VEDTQNRVSF VDGGTVLKIP
101: LFYLEGVVLF PEATLPLRII QPSFLAAVER ALNQANAPST IGVIRVYREG AQFKYASVGT TAEIRQYRRL GDGSFNVITR GQQRFRLKHR WTDVEGFTCG
201: EVQIVDEDVP LRTPRDAFGK LVPLSKLRGR YPLGTASLST PLRDMDAQSE ANSEESFESA LSPSEKRLHY SVVDSIFCNS TSSDDDQVVS TSTVQSSGSN
301: PYSLRSIGCL ASSHDNENED EQSAIGKTPV SQEKYQKQNR LASFRQNTDL SRFRMTPRAF WPFWAYRMFD SYYLAQRAVD LWKQIVGVPN MEAFVNKPDI
401: LSFSIASKIP VSESIRQELL ELDGVSYRLQ REIELLESFD RVRCIHCQTV IARRKDMLVM SNEGPLGAYV NPHGYVHEIM TFYKANDIAL RGRPVKKDSW
501: FPGYAWTIAN CATCETQLGW HFTATNKKLK PSSFWAVRGS QVADDMR
101: LFYLEGVVLF PEATLPLRII QPSFLAAVER ALNQANAPST IGVIRVYREG AQFKYASVGT TAEIRQYRRL GDGSFNVITR GQQRFRLKHR WTDVEGFTCG
201: EVQIVDEDVP LRTPRDAFGK LVPLSKLRGR YPLGTASLST PLRDMDAQSE ANSEESFESA LSPSEKRLHY SVVDSIFCNS TSSDDDQVVS TSTVQSSGSN
301: PYSLRSIGCL ASSHDNENED EQSAIGKTPV SQEKYQKQNR LASFRQNTDL SRFRMTPRAF WPFWAYRMFD SYYLAQRAVD LWKQIVGVPN MEAFVNKPDI
401: LSFSIASKIP VSESIRQELL ELDGVSYRLQ REIELLESFD RVRCIHCQTV IARRKDMLVM SNEGPLGAYV NPHGYVHEIM TFYKANDIAL RGRPVKKDSW
501: FPGYAWTIAN CATCETQLGW HFTATNKKLK PSSFWAVRGS QVADDMR
Arabidopsis Description
ATP-dependent protease La (LON) domain protein [Source:UniProtKB/TrEMBL;Acc:Q5E916]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.