Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- nucleus 2
- cytosol 2
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY54323 | Canola | cytosol, nucleus, plastid | 8.0 | 9.01 |
| CDX85819 | Canola | cytosol | 6.4 | 6.25 |
| CDX91992 | Canola | cytosol | 16.8 | 5.72 |
| CDY26478 | Canola | cytosol | 16.8 | 5.72 |
| CDX74257 | Canola | cytosol | 16.0 | 5.43 |
| CDX70666 | Canola | cytosol | 15.2 | 5.23 |
| CDY57536 | Canola | cytosol | 15.2 | 5.22 |
| CDX69487 | Canola | cytosol | 15.2 | 5.16 |
| CDX78666 | Canola | cytosol | 12.0 | 4.97 |
| CDY71278 | Canola | cytosol | 14.4 | 4.96 |
| CDX88906 | Canola | cytosol | 12.8 | 4.61 |
| CDY71710 | Canola | cytosol, nucleus, plastid | 15.2 | 4.43 |
| CDX70856 | Canola | cytosol | 12.0 | 4.32 |
| CDY43235 | Canola | cytosol, plastid | 15.2 | 4.1 |
| CDY13929 | Canola | cytosol | 11.2 | 4.05 |
| CDX92572 | Canola | cytosol | 11.2 | 4.05 |
| CDY47189 | Canola | cytosol | 10.4 | 3.74 |
| CDY63462 | Canola | plastid | 4.0 | 3.25 |
| CDY06772 | Canola | nucleus | 4.0 | 3.07 |
| CDY49835 | Canola | cytosol | 8.0 | 3.06 |
| CDY33352 | Canola | plastid | 3.2 | 2.6 |
| CDX99815 | Canola | cytosol | 3.2 | 2.17 |
| CDY17081 | Canola | cytosol | 3.2 | 2.14 |
Protein Annotations
| EnsemblPlants:CDX84130 | EnsemblPlantsGene:GSBRNA2T00141139001 | ProteinID:CDX84130 | ProteinID:CDX84130.1 | UniParc:UPI0004EF455B | MapMan:35.2 |
Description
BnaC04g08920D
Coordinates
chrLK031836:-:62615..63818
Molecular Weight (calculated)
13756.4 Da
IEP (calculated)
8.238
GRAVY (calculated)
-0.056
Length
125 amino acids
Sequence
(BLAST)
(BLAST)
001: MPPFLFEDCR ISGGFVHIWK EGIQSVNEIK FKSLSTPTAL RGHPDSVSAW FPNPIVLSFY YKFKQQGDMA LSAIGFEVTR SRLRSQLDEI HTPTACEIVS
101: SSPTITSTLA FSLSPASLST PTKSS
101: SSPTITSTLA FSLSPASLST PTKSS
001: MALSAIGFEG YEKRLEVTFF EPSIFQDSKG LGLRALTKSQ LDEILTPAAC TIVSSLSNDQ LDSYVLSESS FFVYPYKVII KTCGTTKLLL SIPPLLKLAG
101: ELSLSVKSVK YTRGSFLCPG GQPFPHRSFS EEVSVLDGHF TQLGLNSVAY LMGNDDETKK WHVYAASAQD SSNCNNNVYT LEMCMTGLDR EKAAVFYKDE
201: ADKTGSMTDN SGIRKILPKS EICDFEFEPC GYSMNSIEGD AISTIHVTPE DGFSYASFEA VGYDFNTLDL SQLVTRVLSC FEPKQFSVAV HSSVGANSYK
301: PEITVDLEDY GCRERTFESL GEESGTVMYQ TFEKLGKYCG SPRSTLKCEW SSNNSCSSED EKDEGI
101: ELSLSVKSVK YTRGSFLCPG GQPFPHRSFS EEVSVLDGHF TQLGLNSVAY LMGNDDETKK WHVYAASAQD SSNCNNNVYT LEMCMTGLDR EKAAVFYKDE
201: ADKTGSMTDN SGIRKILPKS EICDFEFEPC GYSMNSIEGD AISTIHVTPE DGFSYASFEA VGYDFNTLDL SQLVTRVLSC FEPKQFSVAV HSSVGANSYK
301: PEITVDLEDY GCRERTFESL GEESGTVMYQ TFEKLGKYCG SPRSTLKCEW SSNNSCSSED EKDEGI
Arabidopsis Description
SAMDC1S-adenosylmethionine decarboxylase proenzyme 1 [Source:UniProtKB/Swiss-Prot;Acc:Q96286]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.