CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plastid, cytosol

Predictor Summary:

nucleus 1
plastid 2
mitochondrion 2
cytosol 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol, plastid
Any Predictor:	cytosol, nucleus, plastid
BaCelLo:	nucleus
ChloroP:	plastid
iPSORT:	mitochondrion
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	plastid
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY57536	Canola	cytosol	73.87	93.96
CDY71278	Canola	cytosol	73.22	93.39
CDX74257	Canola	cytosol	72.57	91.3
CDX91992	Canola	cytosol	71.06	89.65
AT3G02470.1	Thale cress	cytosol	70.84	89.62
CDY71710	Canola	cytosol, nucleus, plastid	81.21	87.65
CDY26478	Canola	cytosol	61.77	77.93
CDX70666	Canola	cytosol	60.26	76.86
CDX69487	Canola	cytosol	60.91	76.63
CDX78666	Canola	cytosol	47.3	72.52
VIT_14s0083g00580.t01	Wine grape	cytosol	55.29	63.21
KRH01466	Soybean	cytosol, golgi, nucleus	47.73	61.56
KRH45175	Soybean	cytosol	46.87	60.45
Solyc02g089610.1.1	Tomato	cytosol	46.87	59.94
PGSC0003DMT400026053	Potato	cytosol	46.65	59.67
GSMUA_Achr9P18460_001	Banana	cytosol	45.57	49.65
HORVU5Hr1G064040.8	Barley	cytosol	46.87	49.09
TraesCS6D01G202500.1	Wheat	cytosol	40.82	48.71
TraesCS6B01G249000.1	Wheat	cytosol	40.82	48.71
HORVU6Hr1G056110.1	Barley	cytosol	40.6	48.33
TraesCS6A01G219500.1	Wheat	cytosol	40.39	48.2
TraesCS5B01G220000.1	Wheat	cytosol, nucleus, peroxisome	40.6	47.96
EER98924	Sorghum	cytosol	40.82	47.85
Zm00001d020543_P001	Maize	cytosol	40.39	47.7
TraesCS5D01G228900.1	Wheat	cytosol, nucleus, peroxisome	40.39	47.7
Os09t0424300-03	Rice	cytosol	40.17	47.45
TraesCS5A01G221200.1	Wheat	cytosol	40.17	47.21
TraesCS2D01G352900.1	Wheat	cytosol	41.68	47.19
Os02t0611200-01	Rice	cytosol	39.96	46.84
EES05409	Sorghum	plastid	40.17	46.73
OQU81878	Sorghum	cytosol	45.79	46.59
TraesCS2B01G372900.1	Wheat	cytosol	39.31	46.55
HORVU2Hr1G086140.5	Barley	cytosol	45.14	46.44
Zm00001d025773_P002	Maize	cytosol, plastid	39.31	46.31
Os04t0498600-01	Rice	cytosol	39.52	45.98
Zm00001d051056_P001	Maize	plastid	39.09	45.82
CDY33352	Canola	plastid	15.12	45.45
Zm00001d003157_P001	Maize	cytosol	38.88	45.0
CDY63462	Canola	plastid	14.9	44.81
TraesCS2A01G355400.1	Wheat	cytosol, endoplasmic reticulum, extracellular, golgi, peroxisome, plasma membrane, plastid, vacuole	39.31	43.86
CDY49835	Canola	cytosol	29.81	42.2
CDX92572	Canola	cytosol	30.02	40.17
CDY13929	Canola	cytosol	29.81	39.88
CDX70856	Canola	cytosol	29.81	39.77
CDX88906	Canola	cytosol	29.37	39.19
CDY47189	Canola	cytosol	29.16	38.79
CDX99815	Canola	cytosol	15.33	38.59
CDY17081	Canola	cytosol	15.33	37.97
CDY06772	Canola	nucleus	13.17	37.42
CDY54323	Canola	cytosol, nucleus, plastid	6.26	26.13
CDX85819	Canola	cytosol	6.48	23.44
CDX84130	Canola	cytosol	4.1	15.2

Protein Annotations

KEGG:00270+4.1.1.50	KEGG:00330+4.1.1.50	Gene3D:3.30.360.50	Gene3D:3.60.90.10	MapMan:8.2.1	GO:A0A078HXH9
UniProt:A0A078HXH9	InterPro:AdoMetDC_leader	EnsemblPlants:CDY43235	ProteinID:CDY43235	ProteinID:CDY43235.1	GO:GO:0003674
GO:GO:0003824	GO:GO:0004014	GO:GO:0006597	GO:GO:0008150	GO:GO:0008152	GO:GO:0008295
GO:GO:0009058	GO:GO:0009987	EnsemblPlantsGene:GSBRNA2T00076263001	PFAM:PF01536	PFAM:PF08132	ScanProsite:PS01336
PANTHER:PTHR11570	PANTHER:PTHR11570:SF14	MetaCyc:PWY-6834	InterPro:S-AdoMet_deCO2ase_CS	InterPro:S-AdoMet_deCO2ase_core	InterPro:S-AdoMet_decarboxylase
SUPFAM:SSF56276	TIGRFAMs:TIGR00535	UniPathway:UPA00331	UniParc:UPI0004EEF1A4	SEG:seg	:

Description

BnaC05g48280DBnaC05g48280D protein [Source:UniProtKB/TrEMBL;Acc:A0A078HXH9]

Coordinates

chrLK032550:-:27744..29849

Molecular Weight (calculated)

51077.2 Da

IEP (calculated)

4.800

GRAVY (calculated)

-0.226

Length

463 amino acids

Sequence
(BLAST)

001: MYMFTIRSRN DDVLTALCFF FFTKKISRLP PDVNSSGNKK SSSSSLFYEA PLGYSIEDVR PNGGIKKFKS SVYSNLSLSS FSTLFLLGSP TQSFSPPTMA
101: LSAIGFEGYE KRLEVSFLEP SIFQDSKGLG LRALTRSQLD QILTPAACEI VSSLSNDHLD SYVLSESSFF VYPYKVIIKT CGTTKLLLSI PPLLELAGEL
201: SLSVKSVKYT RGSFLCPGGQ PFPHRSFSEE VSVLDGHFTK LGLNSVAYLM GNDDETKKWH VYAASSPQSS GDNNNVYTLE MCMTGLDREK ASVFYKNGET
301: GTMTDNSGIR KILPKSQICD FEFEPCGYSM NSIEGDAIST IHVTPEDGFS YASFEAVGYD LNTMDLSQLV TRVLSCFEPK QLSVAVHSSV GVNAYKPEIS
401: VDLEDYGCRE RTFESLGEES GMVMYQTFEK LGKYCGSPRS TLKCEWSSNN SSCSSEDEKD EGI

Best Arabidopsis Sequence Match ( AT3G02470.1 )
(BLAST)

001: MALSAIGFEG YEKRLEVTFF EPSIFQDSKG LGLRALTKSQ LDEILTPAAC TIVSSLSNDQ LDSYVLSESS FFVYPYKVII KTCGTTKLLL SIPPLLKLAG
101: ELSLSVKSVK YTRGSFLCPG GQPFPHRSFS EEVSVLDGHF TQLGLNSVAY LMGNDDETKK WHVYAASAQD SSNCNNNVYT LEMCMTGLDR EKAAVFYKDE
201: ADKTGSMTDN SGIRKILPKS EICDFEFEPC GYSMNSIEGD AISTIHVTPE DGFSYASFEA VGYDFNTLDL SQLVTRVLSC FEPKQFSVAV HSSVGANSYK
301: PEITVDLEDY GCRERTFESL GEESGTVMYQ TFEKLGKYCG SPRSTLKCEW SSNNSCSSED EKDEGI

Arabidopsis Description

SAMDC1S-adenosylmethionine decarboxylase proenzyme 1 [Source:UniProtKB/Swiss-Prot;Acc:Q96286]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.