Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- nucleus 2
- cytosol 2
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY71278 | Canola | cytosol | 93.44 | 94.21 |
| CDX74257 | Canola | cytosol | 93.72 | 93.21 |
| CDX91992 | Canola | cytosol | 93.17 | 92.92 |
| Bra039176.1-P | Field mustard | cytosol | 89.34 | 89.84 |
| CDY57536 | Canola | cytosol | 89.34 | 89.84 |
| AT5G15950.2 | Thale cress | cytosol | 80.6 | 81.49 |
| Bra021458.1-P | Field mustard | nucleus | 93.44 | 79.72 |
| CDY71710 | Canola | cytosol, nucleus, plastid | 93.17 | 79.49 |
| Bra001046.1-P | Field mustard | nucleus | 92.9 | 76.58 |
| CDY43235 | Canola | cytosol, plastid | 89.62 | 70.84 |
| KRH01466 | Soybean | cytosol, golgi, nucleus | 62.3 | 63.51 |
| Solyc02g089610.1.1 | Tomato | cytosol | 62.02 | 62.71 |
| PGSC0003DMT400026053 | Potato | cytosol | 61.75 | 62.43 |
| AT3G25570.2 | Thale cress | cytosol | 59.29 | 62.18 |
| KRH45175 | Soybean | cytosol | 60.66 | 61.84 |
| VIT_14s0083g00580.t01 | Wine grape | cytosol | 62.84 | 56.79 |
| AT3G17717.1 | Thale cress | cytosol | 18.31 | 52.76 |
| TraesCS5B01G220000.1 | Wheat | cytosol, nucleus, peroxisome | 52.19 | 48.72 |
| TraesCS5D01G228900.1 | Wheat | cytosol, nucleus, peroxisome | 51.91 | 48.47 |
| TraesCS5A01G221200.1 | Wheat | cytosol | 51.91 | 48.22 |
| TraesCS6B01G249000.1 | Wheat | cytosol | 51.09 | 48.2 |
| EER98924 | Sorghum | cytosol | 51.91 | 48.1 |
| HORVU6Hr1G056110.1 | Barley | cytosol | 51.09 | 48.07 |
| Os09t0424300-03 | Rice | cytosol | 51.37 | 47.96 |
| Zm00001d020543_P001 | Maize | cytosol | 51.37 | 47.96 |
| TraesCS6D01G202500.1 | Wheat | cytosol | 50.82 | 47.94 |
| TraesCS6A01G219500.1 | Wheat | cytosol | 50.55 | 47.68 |
| Os02t0611200-01 | Rice | cytosol | 51.37 | 47.59 |
| Zm00001d025773_P002 | Maize | cytosol, plastid | 50.55 | 47.07 |
| TraesCS2B01G372900.1 | Wheat | cytosol | 50.0 | 46.8 |
| Os04t0498600-01 | Rice | cytosol | 50.27 | 46.23 |
| EES05409 | Sorghum | plastid | 50.0 | 45.98 |
| Zm00001d003157_P001 | Maize | cytosol | 50.0 | 45.75 |
| GSMUA_Achr9P18460_001 | Banana | cytosol | 53.01 | 45.65 |
| Zm00001d051056_P001 | Maize | plastid | 48.91 | 45.32 |
| TraesCS2A01G355400.1 | Wheat | cytosol, endoplasmic reticulum, extracellular, golgi, peroxisome, plasma membrane, plastid, vacuole | 49.73 | 43.86 |
| TraesCS2D01G352900.1 | Wheat | cytosol | 48.63 | 43.52 |
| HORVU5Hr1G064040.8 | Barley | cytosol | 51.91 | 42.99 |
| AT5G18930.1 | Thale cress | cytosol | 39.62 | 41.79 |
| HORVU2Hr1G086140.5 | Barley | cytosol | 50.0 | 40.67 |
| OQU81878 | Sorghum | cytosol | 50.0 | 40.22 |
| CDY63462 | Canola | plastid | 10.93 | 25.97 |
| CDY33352 | Canola | plastid | 10.66 | 25.32 |
| CDY06772 | Canola | nucleus | 10.66 | 23.93 |
| CDX99815 | Canola | cytosol | 10.11 | 20.11 |
| CDY17081 | Canola | cytosol | 10.11 | 19.79 |
Protein Annotations
| KEGG:00270+4.1.1.50 | KEGG:00330+4.1.1.50 | Gene3D:3.30.360.50 | Gene3D:3.60.90.10 | MapMan:8.2.1 | EntrezGene:821214 |
| UniProt:A0A178VEW3 | ProteinID:AAF32454.1 | ProteinID:AEE73812.1 | ProteinID:AEE73813.1 | ProteinID:AEE73814.1 | EMBL:AF428468 |
| EMBL:AK316891 | ArrayExpress:AT3G02470 | EnsemblPlantsGene:AT3G02470 | RefSeq:AT3G02470 | TAIR:AT3G02470 | RefSeq:AT3G02470-TAIR-G |
| EnsemblPlants:AT3G02470.1 | TAIR:AT3G02470.1 | EMBL:AY042824 | EMBL:AY081446 | Unigene:At.25574 | ProteinID:CAA69073.1 |
| GO:GO:0003674 | GO:GO:0003824 | GO:GO:0004014 | GO:GO:0005488 | GO:GO:0005515 | GO:GO:0005575 |
| GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005737 | GO:GO:0005829 | GO:GO:0006139 | GO:GO:0006557 |
| GO:GO:0006596 | GO:GO:0006597 | GO:GO:0007275 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0008295 |
| GO:GO:0009058 | GO:GO:0009987 | GO:GO:0016458 | GO:GO:0016829 | GO:GO:0016831 | GO:GO:0019079 |
| GO:GO:0099402 | RefSeq:NP_001078093.1 | RefSeq:NP_001154585.1 | RefSeq:NP_186896.1 | ProteinID:OAP03442.1 | PFAM:PF01536 |
| PIRSF:PIRSF001355 | PO:PO:0000084 | PO:PO:0000293 | PO:PO:0001016 | PO:PO:0001017 | PO:PO:0025195 |
| PO:PO:0025281 | ScanProsite:PS01336 | PANTHER:PTHR11570 | PANTHER:PTHR11570:SF14 | UniProt:Q96286 | InterPro:S-AdoMet_deCO2ase_CS |
| InterPro:S-AdoMet_deCO2ase_core | InterPro:S-AdoMet_decarboxylase | Symbol:SAMDC | SUPFAM:SSF56276 | TIGRFAMs:TIGR00535 | EMBL:U63633 |
| UniParc:UPI0000000D49 | SEG:seg | : | : | : | : |
Description
SAMDC1S-adenosylmethionine decarboxylase proenzyme 1 [Source:UniProtKB/Swiss-Prot;Acc:Q96286]
Coordinates
chr3:+:509117..511561
Molecular Weight (calculated)
40405.4 Da
IEP (calculated)
4.420
GRAVY (calculated)
-0.255
Length
366 amino acids
Sequence
(BLAST)
(BLAST)
001: MALSAIGFEG YEKRLEVTFF EPSIFQDSKG LGLRALTKSQ LDEILTPAAC TIVSSLSNDQ LDSYVLSESS FFVYPYKVII KTCGTTKLLL SIPPLLKLAG
101: ELSLSVKSVK YTRGSFLCPG GQPFPHRSFS EEVSVLDGHF TQLGLNSVAY LMGNDDETKK WHVYAASAQD SSNCNNNVYT LEMCMTGLDR EKAAVFYKDE
201: ADKTGSMTDN SGIRKILPKS EICDFEFEPC GYSMNSIEGD AISTIHVTPE DGFSYASFEA VGYDFNTLDL SQLVTRVLSC FEPKQFSVAV HSSVGANSYK
301: PEITVDLEDY GCRERTFESL GEESGTVMYQ TFEKLGKYCG SPRSTLKCEW SSNNSCSSED EKDEGI
101: ELSLSVKSVK YTRGSFLCPG GQPFPHRSFS EEVSVLDGHF TQLGLNSVAY LMGNDDETKK WHVYAASAQD SSNCNNNVYT LEMCMTGLDR EKAAVFYKDE
201: ADKTGSMTDN SGIRKILPKS EICDFEFEPC GYSMNSIEGD AISTIHVTPE DGFSYASFEA VGYDFNTLDL SQLVTRVLSC FEPKQFSVAV HSSVGANSYK
301: PEITVDLEDY GCRERTFESL GEESGTVMYQ TFEKLGKYCG SPRSTLKCEW SSNNSCSSED EKDEGI
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.