Factsheet for PGSC0003DMT400026053

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 2
plastid 1
cytosol 4
plasma membrane 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc02g089610.1.1	Tomato	cytosol	96.41	96.41
KRH01466	Soybean	cytosol, golgi, nucleus	66.57	67.13
PGSC0003DMT400041339	Potato	cytosol	67.13	66.94
PGSC0003DMT400019451	Potato	cytosol	66.02	66.39
KRH45175	Soybean	cytosol	65.75	66.3
VIT_14s0083g00580.t01	Wine grape	cytosol	69.34	61.98
Bra008662.1-P	Field mustard	cytosol	62.98	61.96
AT3G02470.1	Thale cress	cytosol	62.43	61.75
AT5G15950.2	Thale cress	cytosol	61.6	61.6
CDY71278	Canola	cytosol	61.6	61.43
CDX91992	Canola	cytosol	62.15	61.31
CDY26478	Canola	cytosol	62.15	61.31
CDX74257	Canola	cytosol	62.15	61.14
CDX69487	Canola	cytosol	61.88	60.87
CDY57536	Canola	cytosol	60.77	60.44
Bra039176.1-P	Field mustard	cytosol	60.5	60.16
CDX70666	Canola	cytosol	59.39	59.23
Bra006334.1-P	Field mustard	cytosol	49.17	58.94
CDX78666	Canola	cytosol	48.07	57.62
Bra021458.1-P	Field mustard	nucleus	61.6	51.98
CDY71710	Canola	cytosol, nucleus, plastid	61.6	51.98
TraesCS6B01G249000.1	Wheat	cytosol	54.97	51.29
HORVU6Hr1G056110.1	Barley	cytosol	54.97	51.16
Os02t0611200-01	Rice	cytosol	55.8	51.14
Bra001046.1-P	Field mustard	nucleus	62.43	50.9
TraesCS2B01G372900.1	Wheat	cytosol	54.7	50.64
TraesCS6A01G219500.1	Wheat	cytosol	54.14	50.52
Zm00001d051056_P001	Maize	plastid	54.7	50.13
EES05409	Sorghum	plastid	54.97	50.0
TraesCS6D01G202500.1	Wheat	cytosol	53.59	50.0
TraesCS5A01G221200.1	Wheat	cytosol	54.42	50.0
TraesCS5B01G220000.1	Wheat	cytosol, nucleus, peroxisome	54.14	50.0
TraesCS5D01G228900.1	Wheat	cytosol, nucleus, peroxisome	53.59	49.49
Os04t0498600-01	Rice	cytosol	54.14	49.25
Zm00001d025773_P002	Maize	cytosol, plastid	52.49	48.35
Zm00001d003157_P001	Maize	cytosol	53.31	48.25
GSMUA_Achr9P18460_001	Banana	cytosol	56.08	47.76
Os09t0424300-03	Rice	cytosol	51.66	47.7
EER98924	Sorghum	cytosol	51.93	47.59
TraesCS2A01G355400.1	Wheat	cytosol, endoplasmic reticulum, extracellular, golgi, peroxisome, plasma membrane, plastid, vacuole	54.42	47.47
Zm00001d020543_P001	Maize	cytosol	51.1	47.19
TraesCS2D01G352900.1	Wheat	cytosol	53.04	46.94
CDY43235	Canola	cytosol, plastid	59.67	46.65
HORVU2Hr1G086140.5	Barley	cytosol	54.7	44.0
HORVU5Hr1G064040.8	Barley	cytosol	53.59	43.89
OQU81878	Sorghum	cytosol	53.59	42.64
PGSC0003DMT400081774	Potato	cytosol	38.67	42.42
PGSC0003DMT400079043	Potato	cytosol	38.67	41.67
CDY63462	Canola	plastid	9.12	21.43
CDY33352	Canola	plastid	8.84	20.78
CDY06772	Canola	nucleus	8.84	19.63
CDX99815	Canola	cytosol	8.56	16.85
CDY17081	Canola	cytosol	8.56	16.58

Protein Annotations

KEGG:00270+4.1.1.50	KEGG:00330+4.1.1.50	EntrezGene:102589057	Gene3D:3.30.360.50	Gene3D:3.60.90.10	MapMan:8.2.1
GO:GO:0003674	GO:GO:0003824	GO:GO:0004014	GO:GO:0006139	GO:GO:0006557	GO:GO:0006596
GO:GO:0006597	GO:GO:0008150	GO:GO:0008152	GO:GO:0008295	GO:GO:0009058	GO:GO:0009987
GO:GO:0016829	GO:GO:0016831	UniProt:M1AMK3	PFAM:PF01536	EnsemblPlantsGene:PGSC0003DMG400010051	PGSC:PGSC0003DMG400010051
EnsemblPlants:PGSC0003DMT400026053	PIRSF:PIRSF001355	ScanProsite:PS01336	PANTHER:PTHR11570	PANTHER:PTHR11570:SF15	InterPro:S-AdoMet_deCO2ase_CS
InterPro:S-AdoMet_deCO2ase_core	InterPro:S-AdoMet_decarboxylase	SUPFAM:SSF56276	TIGRFAMs:TIGR00535	UniParc:UPI0002963236	RefSeq:XP_006338297.1
SEG:seg	:	:	:	:	:

Description

S-adenosylmethionine decarboxylase proenzyme [Source:PGSC_GENE;Acc:PGSC0003DMG400010051]

Coordinates

chr2:+:45046808..45048899

Molecular Weight (calculated)

39586.9 Da

IEP (calculated)

4.450

GRAVY (calculated)

-0.060

Length

362 amino acids

Sequence
(BLAST)

001: MELPVSAIGF EGYEKRLEIC FFELGNSYGP GCGLRSLSKD QLDEILTPAA CTIVSSLAND EVDSYVLSES SLFVYAYKII IKTCGTTKLL LSIPPILKLA
101: DALNLKVKSV RYTRGCFIFP GAQPYPHRHF SEEVAVLDTY FGKLGAGSNA YVMGNADKQQ NWHVYSASAE SADANNMNPV YTLEMCMTNL DKKKASVFFK
201: TQSSTAAEMT EVSGIRKILP ESNICDFDFD PCGYSMNAVE GPAISTIHIT PEDGFSYASF EAVGYDFRAV DLSAMIERVL SCFRPAEFSV ALHCDIPGKE
301: LYTESGLDVI GYVSGEKTTE VLGKGGSLTY LTFSSGGSCG SPRSILSNCW SENEDEEMEK IY

Best Arabidopsis Sequence Match ( AT3G25570.2 )
(BLAST)

001: MAVSATGFEG FEKRLEISFF ETTDFLDPQG KSLRSLTKSQ LDEILTPAEC TIVSSLTNSF VDSYVLSESS LFVYPYKIII KTCGTTKLLL SIPHILRLAD
101: SLCLTVKSVR YTRGSFIFPG AQSYPHRSFS EEVALLDDYF GKLNAGSKAF VMGGSDNNPQ RWHVYSASST EESAVCDKPV YTLEMCMTGL DNIKASVFFK
201: TNSVSASEMT ISSGIRNILP GSEICDFNFE PCGYSMNSIE GDAVSTIHVT PEDGFSYASF ETVGYDLKAL NFKELVDRVL VCFGPEEFSV AVHANLGTEV
301: LASDCVADVN GYFSQERELE ELGLGGSVLY QRFVKTVECC SPKSTLGFC

Arabidopsis Description

SAMDC3S-adenosylmethionine decarboxylase proenzyme 3 [Source:UniProtKB/Swiss-Prot;Acc:Q9LSU6]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.