Factsheet for PGSC0003DMT400019451

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 2
plastid 1
cytosol 3
plasma membrane 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc05g010420.1.1	Tomato	cytosol	95.83	95.83
PGSC0003DMT400041339	Potato	cytosol	80.83	80.17
VIT_01s0010g00990.t01	Wine grape	cytosol	74.17	74.17
KRH75226	Soybean	cytosol	71.67	73.09
KRH71078	Soybean	cytosol	71.11	72.11
AT3G25570.2	Thale cress	cytosol	66.39	68.48
PGSC0003DMT400026053	Potato	cytosol	66.39	66.02
Os02t0611200-01	Rice	cytosol	57.22	52.15
TraesCS6B01G249000.1	Wheat	cytosol	55.0	51.03
TraesCS6A01G219500.1	Wheat	cytosol	54.72	50.77
HORVU6Hr1G056110.1	Barley	cytosol	54.72	50.64
TraesCS6D01G202500.1	Wheat	cytosol	54.44	50.52
Os04t0498600-01	Rice	cytosol	55.83	50.5
Zm00001d051056_P001	Maize	plastid	54.44	49.62
TraesCS2B01G372900.1	Wheat	cytosol	53.89	49.62
EES05409	Sorghum	plastid	54.17	48.99
GSMUA_Achr9P18460_001	Banana	cytosol	57.5	48.71
Zm00001d025773_P002	Maize	cytosol, plastid	52.78	48.35
Zm00001d003157_P001	Maize	cytosol	53.61	48.25
TraesCS2A01G355400.1	Wheat	cytosol, endoplasmic reticulum, extracellular, golgi, peroxisome, plasma membrane, plastid, vacuole	54.72	47.47
TraesCS5D01G228900.1	Wheat	cytosol, nucleus, peroxisome	51.39	47.19
Os09t0424300-03	Rice	cytosol	51.11	46.94
TraesCS5A01G221200.1	Wheat	cytosol	51.11	46.7
TraesCS2D01G352900.1	Wheat	cytosol	52.78	46.45
TraesCS5B01G220000.1	Wheat	cytosol, nucleus, peroxisome	50.56	46.43
EER98924	Sorghum	cytosol	50.28	45.82
Zm00001d020543_P001	Maize	cytosol	49.17	45.15
HORVU2Hr1G086140.5	Barley	cytosol	54.44	43.56
OQU81878	Sorghum	cytosol	54.17	42.86
PGSC0003DMT400081774	Potato	cytosol	38.33	41.82
HORVU5Hr1G064040.8	Barley	cytosol	50.83	41.4
PGSC0003DMT400079043	Potato	cytosol	38.61	41.37

Protein Annotations

KEGG:00270+4.1.1.50	KEGG:00330+4.1.1.50	PDB:1MHM	Gene3D:3.30.360.50	Gene3D:3.60.90.10	MapMan:8.2.1
ProteinID:AAB32507	ProteinID:AAB32507.1	ProteinID:CAA77742	ProteinID:CAA77742.1	GO:GO:0003674	GO:GO:0003824
GO:GO:0004014	GO:GO:0006139	GO:GO:0006557	GO:GO:0006596	GO:GO:0006597	GO:GO:0008150
GO:GO:0008152	GO:GO:0008295	GO:GO:0009058	GO:GO:0009987	GO:GO:0016829	GO:GO:0016831
UniProt:M1AC39	PFAM:PF01536	EnsemblPlantsGene:PGSC0003DMG400007518	PGSC:PGSC0003DMG400007518	EnsemblPlants:PGSC0003DMT400019451	PIRSF:PIRSF001355
ScanProsite:PS01336	PANTHER:PTHR11570	PANTHER:PTHR11570:SF15	InterPro:S-AdoMet_deCO2ase_CS	InterPro:S-AdoMet_deCO2ase_core	InterPro:S-AdoMet_decarboxylase
EMBL:S74514	SUPFAM:SSF56276	TIGRFAMs:TIGR00535	UniParc:UPI000295F30B	EMBL:Z11680	SEG:seg

Description

S-adenosylmethionine decarboxylase beta chain [Source:PGSC_GENE;Acc:PGSC0003DMG400007518]

Coordinates

chr5:+:1292833..1296323

Molecular Weight (calculated)

39713.3 Da

IEP (calculated)

4.767

GRAVY (calculated)

-0.134

Length

360 amino acids

Sequence
(BLAST)

001: MEMDLPVSAI GFEGFEKRLE ISFVEPGLFA DPNGKGLRSL SKAQLDEILG PAECTIVDNL SNDYVDSYVL SESSLFVYSY KIIIKTCGTT KLLLAIPPIL
101: RLAETLSLKV QDVRYTRGSF IFPGAQSFPH RHFSEEVAVL DGYFGKLAAG SKAVIMGSPN KTQKWHVYSA SAGSVQSNDP VYTLEMCMTG LDREKASVFY
201: KTEESSAAHM TVRSGIRKIL PKSEICDFEF EPCGYSMNSI EGAAVSTIHI TPEDGFSYAS FESVGYNPKT MELGPLVERV LACFEPAEFS IALHADVATK
301: LLERVCSVDV KGYSLAEWSP EEFGEGGSIV YQKFTRTPYC ESPKSVLKGC WKEEEKEGKE

Best Arabidopsis Sequence Match ( AT3G25570.2 )
(BLAST)

001: MAVSATGFEG FEKRLEISFF ETTDFLDPQG KSLRSLTKSQ LDEILTPAEC TIVSSLTNSF VDSYVLSESS LFVYPYKIII KTCGTTKLLL SIPHILRLAD
101: SLCLTVKSVR YTRGSFIFPG AQSYPHRSFS EEVALLDDYF GKLNAGSKAF VMGGSDNNPQ RWHVYSASST EESAVCDKPV YTLEMCMTGL DNIKASVFFK
201: TNSVSASEMT ISSGIRNILP GSEICDFNFE PCGYSMNSIE GDAVSTIHVT PEDGFSYASF ETVGYDLKAL NFKELVDRVL VCFGPEEFSV AVHANLGTEV
301: LASDCVADVN GYFSQERELE ELGLGGSVLY QRFVKTVECC SPKSTLGFC

Arabidopsis Description

SAMDC3S-adenosylmethionine decarboxylase proenzyme 3 [Source:UniProtKB/Swiss-Prot;Acc:Q9LSU6]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.