CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 1
cytosol 2
mitochondrion 1
cytoskeleton 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytoskeleton, cytosol, mitochondrion
BaCelLo:	nucleus
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	cytoskeleton
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH71078	Soybean	cytosol	94.62	94.08
VIT_01s0010g00990.t01	Wine grape	cytosol	73.37	71.94
PGSC0003DMT400019451	Potato	cytosol	73.09	71.67
Solyc05g010420.1.1	Tomato	cytosol	73.09	71.67
AT3G25570.2	Thale cress	cytosol	67.71	68.48
PGSC0003DMT400041339	Potato	cytosol	69.69	67.77
Solyc01g010050.2.1	Tomato	cytosol	67.99	65.93
KRH01466	Soybean	cytosol, golgi, nucleus	66.57	65.46
KRH45175	Soybean	cytosol	66.29	65.18
KRH02991	Soybean	cytosol	47.59	46.93
GSMUA_Achr9P18460_001	Banana	cytosol	55.81	46.35
KRH50975	Soybean	cytosol	38.81	39.6
KRH11332	Soybean	cytosol	38.24	38.57
KRH20949	Soybean	cytosol	38.24	38.57
KRH02157	Soybean	cytosol	38.24	38.24

Protein Annotations

KEGG:00270+4.1.1.50	KEGG:00330+4.1.1.50	Gene3D:3.30.360.50	Gene3D:3.60.90.10	MapMan:8.2.1	UniProt:A0A0R0L7R0
EMBL:ACUP02000164	EnsemblPlantsGene:GLYMA_01G071300	GO:GO:0003674	GO:GO:0003824	GO:GO:0004014	GO:GO:0006139
GO:GO:0006557	GO:GO:0006596	GO:GO:0006597	GO:GO:0008150	GO:GO:0008152	GO:GO:0008295
GO:GO:0009058	GO:GO:0009987	GO:GO:0016829	GO:GO:0016831	EnsemblPlants:KRH75226	ProteinID:KRH75226
ProteinID:KRH75226.1	PFAM:PF01536	PIRSF:PIRSF001355	ScanProsite:PS01336	PANTHER:PTHR11570	PANTHER:PTHR11570:SF15
MetaCyc:PWY-6834	InterPro:S-AdoMet_deCO2ase_CS	InterPro:S-AdoMet_deCO2ase_core	InterPro:S-AdoMet_decarboxylase	SUPFAM:SSF56276	TIGRFAMs:TIGR00535
UniParc:UPI0001B63E02	:	:	:	:	:

Description

hypothetical protein

Coordinates

chr1:+:12899195..12902071

Molecular Weight (calculated)

38934.3 Da

IEP (calculated)

4.638

GRAVY (calculated)

-0.052

Length

353 amino acids

Sequence
(BLAST)

001: MAVSAIGFEG FEKRLEISFF QPGLFADPEG MGLRALAKSQ LDEILTPAAC TIVSSLRNDH VDSYVLSESS LFVYAYKIII KTCGTTKLLL AIPPILKFAE
101: MLSLNVRSVN YTRGSFIFPG AQPYPHRNFS EEVAILDGYF GKLSAGSNAY ILGGQDKSQN WHVYSASADS VTPCDNVYTL EMCMTGLDRE KAQVFYKEQS
201: ASAAIMTVNS GIRKILPDSE ICDFDFEPCG YSMNSVEGAA VSTIHVTPED GFSYASFETV GYDFKVVNLN EMVKRVLACF LPTEFSVAVH VDGASKLFDQ
301: TCFLDVKGYC REERSHEGLG MGGSLVYQKF AKTCDCGSPR STLKCWKEED EEE

Best Arabidopsis Sequence Match ( AT3G25570.2 )
(BLAST)

001: MAVSATGFEG FEKRLEISFF ETTDFLDPQG KSLRSLTKSQ LDEILTPAEC TIVSSLTNSF VDSYVLSESS LFVYPYKIII KTCGTTKLLL SIPHILRLAD
101: SLCLTVKSVR YTRGSFIFPG AQSYPHRSFS EEVALLDDYF GKLNAGSKAF VMGGSDNNPQ RWHVYSASST EESAVCDKPV YTLEMCMTGL DNIKASVFFK
201: TNSVSASEMT ISSGIRNILP GSEICDFNFE PCGYSMNSIE GDAVSTIHVT PEDGFSYASF ETVGYDLKAL NFKELVDRVL VCFGPEEFSV AVHANLGTEV
301: LASDCVADVN GYFSQERELE ELGLGGSVLY QRFVKTVECC SPKSTLGFC

Arabidopsis Description

SAMDC3S-adenosylmethionine decarboxylase proenzyme 3 [Source:UniProtKB/Swiss-Prot;Acc:Q9LSU6]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.