Factsheet for Solyc01g010050.2.1

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 2
plastid 1
cytosol 3
plasma membrane 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400041339	Potato	cytosol	94.51	94.77
Solyc05g010420.1.1	Tomato	cytosol	77.2	78.06
VIT_01s0010g00990.t01	Wine grape	cytosol	71.15	71.94
KRH75226	Soybean	cytosol	65.93	67.99
KRH71078	Soybean	cytosol	65.93	67.61
AT3G25570.2	Thale cress	cytosol	64.29	67.05
Solyc02g089610.1.1	Tomato	cytosol	65.66	66.02
Os02t0611200-01	Rice	cytosol	57.14	52.66
TraesCS6B01G249000.1	Wheat	cytosol	54.95	51.55
TraesCS6A01G219500.1	Wheat	cytosol	54.95	51.55
TraesCS6D01G202500.1	Wheat	cytosol	54.67	51.29
HORVU6Hr1G056110.1	Barley	cytosol	54.67	51.16
Zm00001d051056_P001	Maize	plastid	55.49	51.14
Os04t0498600-01	Rice	cytosol	55.77	51.01
TraesCS2B01G372900.1	Wheat	cytosol	54.67	50.9
EES05409	Sorghum	plastid	55.22	50.5
Zm00001d003157_P001	Maize	cytosol	55.22	50.25
Zm00001d025773_P002	Maize	cytosol, plastid	54.12	50.13
Os09t0424300-03	Rice	cytosol	52.75	48.98
Zm00001d020543_P001	Maize	cytosol	51.92	48.21
TraesCS2A01G355400.1	Wheat	cytosol, endoplasmic reticulum, extracellular, golgi, peroxisome, plasma membrane, plastid, vacuole	54.95	48.19
EER98924	Sorghum	cytosol	51.92	47.85
GSMUA_Achr9P18460_001	Banana	cytosol	55.77	47.76
TraesCS5B01G220000.1	Wheat	cytosol, nucleus, peroxisome	51.37	47.7
TraesCS5D01G228900.1	Wheat	cytosol, nucleus, peroxisome	51.37	47.7
TraesCS2D01G352900.1	Wheat	cytosol	53.3	47.43
TraesCS5A01G221200.1	Wheat	cytosol	51.1	47.21
OQU81878	Sorghum	cytosol	56.04	44.84
HORVU2Hr1G086140.5	Barley	cytosol	55.22	44.67
HORVU5Hr1G064040.8	Barley	cytosol	51.65	42.53
Solyc06g054460.1.1	Tomato	cytosol	38.19	41.12
Solyc01g080380.2.1	Tomato	cytosol	35.71	39.39

Protein Annotations

KEGG:00270+4.1.1.50	KEGG:00330+4.1.1.50	Gene3D:3.30.360.50	Gene3D:3.60.90.10	MapMan:8.2.1	GO:GO:0003674
GO:GO:0003824	GO:GO:0004014	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737
GO:GO:0005829	GO:GO:0006139	GO:GO:0006557	GO:GO:0006596	GO:GO:0006597	GO:GO:0008150
GO:GO:0008152	GO:GO:0008295	GO:GO:0009058	GO:GO:0009987	GO:GO:0016829	GO:GO:0016831
UniProt:K4ATK0	PFAM:PF01536	PIRSF:PIRSF001355	ScanProsite:PS01336	PANTHER:PTHR11570	PANTHER:PTHR11570:SF15
InterPro:S-AdoMet_deCO2ase_CS	InterPro:S-AdoMet_deCO2ase_core	InterPro:S-AdoMet_decarboxylase	SUPFAM:SSF56276	EnsemblPlantsGene:Solyc01g010050.2	EnsemblPlants:Solyc01g010050.2.1
TIGRFAMs:TIGR00535	UniParc:UPI00027618FF	SEG:seg	:	:	:

Description

S-adenosylmethionine decarboxylase proenzyme [Source:UniProtKB/TrEMBL;Acc:K4ATK0]

Coordinates

chr1:+:4683610..4687162

Molecular Weight (calculated)

40194.9 Da

IEP (calculated)

5.143

GRAVY (calculated)

-0.040

Length

364 amino acids

Sequence
(BLAST)

001: MVALPVSAIG FEGYEKRLEI SFFEPGLFAD PEGKGLRSLS KAQLDEFLGP AECTIVDSLS NECVDSYVLS ESSLFIYPYK IVIKTCGTTK LLLSIPVILK
101: LADTLSLKVQ AVKYTRGSFI FPGAQSFPHR HFSEEVAVLD SYFGNLSSGS KAVILGSHDN LQKWHVYSAS AGSIQTKNPV YTLEMCMTNL LRKKASVFYK
201: TESSSAAEMT IRSGIRKILP NSDICDFEFD PCGYSMNSIE GAALSTIHVT PEDGFSYASF EAVGYDLNSS SLGSLVRRVL TCFQPDEFSV ALHADYVACE
301: LLERICSFDV KGYSHAEWSP EELGKGGLIV YRKFTRSSLC GSPKSVLQDC WNEEEKRNEV KEVC

Best Arabidopsis Sequence Match ( AT3G25570.2 )
(BLAST)

001: MAVSATGFEG FEKRLEISFF ETTDFLDPQG KSLRSLTKSQ LDEILTPAEC TIVSSLTNSF VDSYVLSESS LFVYPYKIII KTCGTTKLLL SIPHILRLAD
101: SLCLTVKSVR YTRGSFIFPG AQSYPHRSFS EEVALLDDYF GKLNAGSKAF VMGGSDNNPQ RWHVYSASST EESAVCDKPV YTLEMCMTGL DNIKASVFFK
201: TNSVSASEMT ISSGIRNILP GSEICDFNFE PCGYSMNSIE GDAVSTIHVT PEDGFSYASF ETVGYDLKAL NFKELVDRVL VCFGPEEFSV AVHANLGTEV
301: LASDCVADVN GYFSQERELE ELGLGGSVLY QRFVKTVECC SPKSTLGFC

Arabidopsis Description

SAMDC3S-adenosylmethionine decarboxylase proenzyme 3 [Source:UniProtKB/Swiss-Prot;Acc:Q9LSU6]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.