Factsheet for Solyc06g054460.1.1

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 3
plastid 1
cytosol 2
plasma membrane 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400079043	Potato	cytosol	92.01	92.56
Solyc01g080380.2.1	Tomato	cytosol	71.89	73.64
VIT_05s0020g02370.t01	Wine grape	cytosol	68.64	66.29
KRH50975	Soybean	cytosol	65.68	64.16
KRH02157	Soybean	cytosol	65.38	62.61
KRH11332	Soybean	cytosol	64.2	62.0
KRH20949	Soybean	cytosol	63.61	61.43
AT5G18930.1	Thale cress	cytosol	57.1	55.62
CDX88906	Canola	cytosol	56.8	55.33
CDX70856	Canola	cytosol	55.62	54.18
Bra002194.1-P	Field mustard	cytosol	55.33	54.05
CDX92572	Canola	cytosol	55.33	54.05
Bra023699.1-P	Field mustard	cytosol	56.21	53.82
CDY13929	Canola	cytosol	55.03	53.76
Bra006485.1-P	Field mustard	cytosol	55.03	53.76
GSMUA_Achr3P22890_001	Banana	cytosol	53.25	53.73
GSMUA_Achr11P...	Banana	cytosol	53.25	52.63
CDY47189	Canola	cytosol	53.25	51.72
Os05t0141800-00	Rice	cytosol	46.45	43.73
Solyc02g089610.1.1	Tomato	cytosol	42.01	39.23
Solyc05g010420.1.1	Tomato	cytosol	40.83	38.33
Solyc01g010050.2.1	Tomato	cytosol	41.12	38.19

Protein Annotations

KEGG:00270+4.1.1.50	KEGG:00330+4.1.1.50	Gene3D:3.30.360.50	Gene3D:3.60.90.10	MapMan:8.2.1	GO:GO:0003674
GO:GO:0003824	GO:GO:0004014	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737
GO:GO:0005829	GO:GO:0006139	GO:GO:0006557	GO:GO:0006596	GO:GO:0006597	GO:GO:0008150
GO:GO:0008152	GO:GO:0008295	GO:GO:0009058	GO:GO:0009987	GO:GO:0016829	GO:GO:0016831
UniProt:K4C6D2	PFAM:PF01536	PIRSF:PIRSF001355	ScanProsite:PS01336	PANTHER:PTHR11570	PANTHER:PTHR11570:SF1
InterPro:S-AdoMet_deCO2ase_CS	InterPro:S-AdoMet_deCO2ase_core	InterPro:S-AdoMet_decarboxylase	SUPFAM:SSF56276	EnsemblPlantsGene:Solyc06g054460.1	EnsemblPlants:Solyc06g054460.1.1
TIGRFAMs:TIGR00535	UniParc:UPI0002765B7C	SEG:seg	:	:	:

Description

S-adenosylmethionine decarboxylase proenzyme [Source:UniProtKB/TrEMBL;Acc:K4C6D2]

Coordinates

chr6:-:37225779..37226795

Molecular Weight (calculated)

37834.1 Da

IEP (calculated)

5.198

GRAVY (calculated)

-0.079

Length

338 amino acids

Sequence
(BLAST)

001: MAASGFEGFE KRLEIHFSGD DPAIEMGGLR QLDFDSLEQV LHAVQCTVVS AVSNQYFDSY VLSESSLFVY PTKIIIKTCG TTQLLKSIRP FIHFACQMGL
101: IITECRYTRG NYIFPKAQPY PHTSFKEEIS YLQDQLPNHL CYRKASVMPS KFTSHSWHVF SACDKFYPIP IPNDQYTVEI CMTDLDLVLA RKFFKNPDTT
201: GKQMTEVTGI GEIIPSALIC EFAFDPCGYS MNGIDGDRYS TIHVTPEDGF SYASYECVGS VYDEDDIDRI LKKVVQVFLP GTMSVSISCS SSSSSSEIST
301: RIVKAVEPLG MKRRNCTIDE FPAAGTVVFQ TFTLTGNR

Best Arabidopsis Sequence Match ( AT5G18930.1 )
(BLAST)

001: MAVSGFEGFE KRLELRFFDD DKPITKNPMG LRLIDFESLD QVLNEVQCTV VSAVANRSFD AYVLSESSLF VYPTKIIIKT CGTTQLLKSI RPLIHLARNL
101: GLTLRACRYS RGSFIFPKAQ PFPYTSFKDE VIVVEESLPK SLCYRKASVM TPSNNPSRAW HVFTASADVE SDEHVVVVEV CMTELDRVNA RSFFKRKGDE
201: KNNSDSAGKE MTRLSGIDNI NANAYICDFA FDPCGYSMNG VDGDRYSTIH VTPEDGFSYA SFECGLSLYD NGHEDISEVL SRAIDVFRPS DVSIATTYGG
301: EDYNHEVTKR VERVLAKKLD LKCRSRLMDE FPGSGTVVYQ SFTPRRK

Arabidopsis Description

SAMDC4S-adenosylmethionine decarboxylase proenzyme 4 [Source:UniProtKB/Swiss-Prot;Acc:Q3E9D5]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.