Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- nucleus 2
- cytosol 2
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Bra002194.1-P | Field mustard | cytosol | 89.05 | 89.31 |
| Bra006485.1-P | Field mustard | cytosol | 86.74 | 86.99 |
| CDX70856 | Canola | cytosol | 86.74 | 86.74 |
| CDX92572 | Canola | cytosol | 85.88 | 86.13 |
| Bra023699.1-P | Field mustard | cytosol | 87.61 | 86.12 |
| CDX88906 | Canola | cytosol | 85.59 | 85.59 |
| CDY13929 | Canola | cytosol | 84.73 | 84.97 |
| CDY47189 | Canola | cytosol | 83.0 | 82.76 |
| VIT_05s0020g02370.t01 | Wine grape | cytosol | 63.69 | 63.14 |
| Solyc01g080380.2.1 | Tomato | cytosol | 59.94 | 63.03 |
| PGSC0003DMT400081774 | Potato | cytosol | 59.94 | 63.03 |
| KRH50975 | Soybean | cytosol | 59.65 | 59.83 |
| KRH02157 | Soybean | cytosol | 60.81 | 59.77 |
| PGSC0003DMT400079043 | Potato | cytosol | 56.77 | 58.63 |
| KRH20949 | Soybean | cytosol | 58.5 | 58.0 |
| KRH11332 | Soybean | cytosol | 58.21 | 57.71 |
| Solyc06g054460.1.1 | Tomato | cytosol | 55.62 | 57.1 |
| GSMUA_Achr3P22890_001 | Banana | cytosol | 53.6 | 55.52 |
| GSMUA_Achr11P... | Banana | cytosol | 53.6 | 54.39 |
| Os05t0141800-00 | Rice | cytosol | 46.4 | 44.85 |
| AT3G25570.2 | Thale cress | cytosol | 42.65 | 42.41 |
| AT3G02470.1 | Thale cress | cytosol | 41.79 | 39.62 |
| AT5G15950.2 | Thale cress | cytosol | 40.63 | 38.95 |
| AT3G17717.1 | Thale cress | cytosol | 12.97 | 35.43 |
Protein Annotations
| KEGG:00270+4.1.1.50 | KEGG:00330+4.1.1.50 | Gene3D:3.30.360.50 | Gene3D:3.60.90.10 | MapMan:8.2.1 | EntrezGene:832011 |
| UniProt:A0A178USH3 | EMBL:AC068655 | ProteinID:AED92629.1 | ArrayExpress:AT5G18930 | EnsemblPlantsGene:AT5G18930 | RefSeq:AT5G18930 |
| TAIR:AT5G18930 | RefSeq:AT5G18930-TAIR-G | EnsemblPlants:AT5G18930.1 | TAIR:AT5G18930.1 | Unigene:At.65528 | Symbol:BUD2 |
| EMBL:DQ217414 | GO:GO:0003674 | GO:GO:0003824 | GO:GO:0004014 | GO:GO:0005575 | GO:GO:0005622 |
| GO:GO:0005623 | GO:GO:0005737 | GO:GO:0005829 | GO:GO:0006139 | GO:GO:0006557 | GO:GO:0006596 |
| GO:GO:0006597 | GO:GO:0007275 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0008295 | GO:GO:0009058 |
| GO:GO:0009987 | GO:GO:0016829 | GO:GO:0016831 | GO:GO:0099402 | RefSeq:NP_197394.1 | ProteinID:OAO96440.1 |
| PFAM:PF01536 | PIRSF:PIRSF001355 | PO:PO:0000037 | PO:PO:0000230 | PO:PO:0001078 | PO:PO:0001081 |
| PO:PO:0001185 | PO:PO:0004507 | PO:PO:0007611 | PO:PO:0007616 | PO:PO:0009005 | PO:PO:0009009 |
| PO:PO:0009010 | PO:PO:0009031 | PO:PO:0009032 | PO:PO:0009046 | PO:PO:0009052 | PO:PO:0020100 |
| PO:PO:0025022 | ScanProsite:PS01336 | PANTHER:PTHR11570 | PANTHER:PTHR11570:SF1 | UniProt:Q3E9D5 | InterPro:S-AdoMet_deCO2ase_CS |
| InterPro:S-AdoMet_deCO2ase_core | InterPro:S-AdoMet_decarboxylase | SUPFAM:SSF56276 | TIGRFAMs:TIGR00535 | UniParc:UPI00001624E8 | SEG:seg |
Description
SAMDC4S-adenosylmethionine decarboxylase proenzyme 4 [Source:UniProtKB/Swiss-Prot;Acc:Q3E9D5]
Coordinates
chr5:-:6311725..6313372
Molecular Weight (calculated)
39041.2 Da
IEP (calculated)
6.004
GRAVY (calculated)
-0.293
Length
347 amino acids
Sequence
(BLAST)
(BLAST)
001: MAVSGFEGFE KRLELRFFDD DKPITKNPMG LRLIDFESLD QVLNEVQCTV VSAVANRSFD AYVLSESSLF VYPTKIIIKT CGTTQLLKSI RPLIHLARNL
101: GLTLRACRYS RGSFIFPKAQ PFPYTSFKDE VIVVEESLPK SLCYRKASVM TPSNNPSRAW HVFTASADVE SDEHVVVVEV CMTELDRVNA RSFFKRKGDE
201: KNNSDSAGKE MTRLSGIDNI NANAYICDFA FDPCGYSMNG VDGDRYSTIH VTPEDGFSYA SFECGLSLYD NGHEDISEVL SRAIDVFRPS DVSIATTYGG
301: EDYNHEVTKR VERVLAKKLD LKCRSRLMDE FPGSGTVVYQ SFTPRRK
101: GLTLRACRYS RGSFIFPKAQ PFPYTSFKDE VIVVEESLPK SLCYRKASVM TPSNNPSRAW HVFTASADVE SDEHVVVVEV CMTELDRVNA RSFFKRKGDE
201: KNNSDSAGKE MTRLSGIDNI NANAYICDFA FDPCGYSMNG VDGDRYSTIH VTPEDGFSYA SFECGLSLYD NGHEDISEVL SRAIDVFRPS DVSIATTYGG
301: EDYNHEVTKR VERVLAKKLD LKCRSRLMDE FPGSGTVVYQ SFTPRRK
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.