Factsheet for VIT_01s0010g00990.t01

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 3
plastid 1
cytosol 2
plasma membrane 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400019451	Potato	cytosol	74.17	74.17
KRH75226	Soybean	cytosol	71.94	73.37
PGSC0003DMT400041339	Potato	cytosol	73.61	73.0
KRH71078	Soybean	cytosol	71.94	72.96
Solyc05g010420.1.1	Tomato	cytosol	72.78	72.78
Solyc01g010050.2.1	Tomato	cytosol	71.94	71.15
VIT_14s0083g00580.t01	Wine grape	cytosol	76.39	67.9
AT3G25570.2	Thale cress	cytosol	65.28	67.34
VIT_11s0037g00950.t01	Wine grape	cytosol	55.83	51.94
GSMUA_Achr9P18460_001	Banana	cytosol	58.61	49.65
VIT_05s0020g02370.t01	Wine grape	cytosol	41.39	42.57

Protein Annotations

KEGG:00270+4.1.1.50	KEGG:00330+4.1.1.50	EntrezGene:100240686	wikigene:100240686	Gene3D:3.30.360.50	Gene3D:3.60.90.10
MapMan:8.2.1	EMBL:AB240537	EMBL:AJ567368	EMBL:AM470991	ProteinID:BAE72687	ProteinID:BAE72687.1
ProteinID:CAD98785	ProteinID:CAD98785.2	ProteinID:CAN66014	ProteinID:CAN66014.1	ProteinID:CCB51167	ProteinID:CCB51167.1
UniProt:F6HGG6	EMBL:FN595754	GO:GO:0003674	GO:GO:0003824	GO:GO:0004014	GO:GO:0005575
GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0005829	GO:GO:0006139	GO:GO:0006557
GO:GO:0006596	GO:GO:0006597	GO:GO:0008150	GO:GO:0008152	GO:GO:0008295	GO:GO:0009058
GO:GO:0009987	GO:GO:0016829	GO:GO:0016831	PFAM:PF01536	PIRSF:PIRSF001355	ScanProsite:PS01336
PANTHER:PTHR11570	PANTHER:PTHR11570:SF15	InterPro:S-AdoMet_deCO2ase_CS	InterPro:S-AdoMet_deCO2ase_core	InterPro:S-AdoMet_decarboxylase	EntrezGene:SAMDC
wikigene:SAMDC	SUPFAM:SSF56276	TIGR:TC65129	TIGRFAMs:TIGR00535	UniParc:UPI00015C99C1	ArrayExpress:VIT_01s0010g00990
EnsemblPlantsGene:VIT_01s0010g00990	EnsemblPlants:VIT_01s0010g00990.t01	unigene:Vvi.13709	unigene:Vvi.7522	RefSeq:XP_003631339	RefSeq:XP_003631339.1
RefSeq:XP_010654269.1	SEG:seg	:	:	:	:

Description

S-adenosylmethionine decarboxylase proenzyme [Source:UniProtKB/TrEMBL;Acc:F6HGG6]

Coordinates

chr1:+:16536015..16537239

Molecular Weight (calculated)

39962.5 Da

IEP (calculated)

4.575

GRAVY (calculated)

-0.142

Length

360 amino acids

Sequence
(BLAST)

001: MALPVSAIGF EGYEKRLEIS FSEPGIFSDP EGRGLRSLSR AQLDEILEPA ECIIVGSLSN DIVDSYVLSE SSLFVYPYKI IIKTCGTTKL LLSIPPILKL
101: ADALSLSVSC VRYTRGSFNF PGAQPYPHRH FSEEVAVLDS YFGKLGSGSK AYVMGSSDKS QKWHVYSASA EVRSACDPVY TLEMCMTGLD REMASVFYKT
201: HSSSAVKMTD TSGIRKILPD SEICDFEFDP CGYSMNAIEG AAISTIHVTP EDGFSYASFE TMGYNPKDVN LSQLIERVLS CFQPNEFSVA VHADISGKLL
301: ERNCLLDVKG YCCEERSNEE LGMCGSIVYH RFMKTEGLVS PRSILKCCWK EEEEEEEEKE

Best Arabidopsis Sequence Match ( AT3G25570.2 )
(BLAST)

001: MAVSATGFEG FEKRLEISFF ETTDFLDPQG KSLRSLTKSQ LDEILTPAEC TIVSSLTNSF VDSYVLSESS LFVYPYKIII KTCGTTKLLL SIPHILRLAD
101: SLCLTVKSVR YTRGSFIFPG AQSYPHRSFS EEVALLDDYF GKLNAGSKAF VMGGSDNNPQ RWHVYSASST EESAVCDKPV YTLEMCMTGL DNIKASVFFK
201: TNSVSASEMT ISSGIRNILP GSEICDFNFE PCGYSMNSIE GDAVSTIHVT PEDGFSYASF ETVGYDLKAL NFKELVDRVL VCFGPEEFSV AVHANLGTEV
301: LASDCVADVN GYFSQERELE ELGLGGSVLY QRFVKTVECC SPKSTLGFC

Arabidopsis Description

SAMDC3S-adenosylmethionine decarboxylase proenzyme 3 [Source:UniProtKB/Swiss-Prot;Acc:Q9LSU6]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.