CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 2
plastid 2
cytosol 4
plasma membrane 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d020543_P001	Maize	cytosol	88.86	89.54
Os09t0424300-03	Rice	cytosol	80.25	80.87
TraesCS5B01G220000.1	Wheat	cytosol, nucleus, peroxisome	79.49	80.1
TraesCS5D01G228900.1	Wheat	cytosol, nucleus, peroxisome	78.48	79.08
TraesCS5A01G221200.1	Wheat	cytosol	78.23	78.43
HORVU5Hr1G064040.8	Barley	cytosol	79.49	71.04
GSMUA_Achr9P13400_001	Banana	cytosol	63.54	69.72
GSMUA_Achr7P19450_001	Banana	cytosol, plastid	65.82	67.89
GSMUA_Achr5P24230_001	Banana	cytosol, peroxisome, plastid	67.85	67.68
GSMUA_Achr3P04790_001	Banana	cytosol	63.8	67.56
EES05409	Sorghum	plastid	63.54	63.07
OQU81878	Sorghum	cytosol	64.56	56.04
VIT_11s0037g00950.t01	Wine grape	cytosol	54.43	55.56
CDY57536	Canola	cytosol	48.35	52.47
AT3G25570.2	Thale cress	cytosol	46.33	52.44
Bra039176.1-P	Field mustard	cytosol	48.1	52.2
CDY71278	Canola	cytosol	47.85	52.07
PGSC0003DMT400026053	Potato	cytosol	47.59	51.93
Solyc01g010050.2.1	Tomato	cytosol	47.85	51.92
AT3G02470.1	Thale cress	cytosol	48.1	51.91
CDX74257	Canola	cytosol	48.1	51.63
CDX91992	Canola	cytosol	47.59	51.23
Solyc02g089610.1.1	Tomato	cytosol	46.84	51.1
PGSC0003DMT400041339	Potato	cytosol	46.84	50.96
AT5G15950.2	Thale cress	cytosol	46.58	50.83
KRH02991	Soybean	cytosol	45.57	50.28
PGSC0003DMT400019451	Potato	cytosol	45.82	50.28
CDX69487	Canola	cytosol	46.84	50.27
Bra008662.1-P	Field mustard	cytosol	46.84	50.27
CDX70666	Canola	cytosol	45.57	49.59
Solyc05g010420.1.1	Tomato	cytosol	45.06	49.44
CDY26478	Canola	cytosol	45.82	49.32
CDX78666	Canola	cytosol	36.46	47.68
Bra006334.1-P	Field mustard	cytosol	36.2	47.35
CDY71710	Canola	cytosol, nucleus, plastid	47.59	43.82
Bra021458.1-P	Field mustard	nucleus	47.59	43.82
Bra001046.1-P	Field mustard	nucleus	48.61	43.24
AT3G17717.1	Thale cress	cytosol	13.67	42.52
CDY43235	Canola	cytosol, plastid	47.85	40.82
Bra021271.1-P	Field mustard	cytosol	29.11	35.17
CDY49835	Canola	cytosol	28.61	34.56
CDY63462	Canola	plastid	8.1	20.78
CDY33352	Canola	plastid	7.85	20.13
CDY06772	Canola	nucleus	8.1	19.63
CDX99815	Canola	cytosol	7.85	16.85
CDY17081	Canola	cytosol	7.85	16.58

Protein Annotations

KEGG:00270+4.1.1.50	KEGG:00330+4.1.1.50	Gene3D:3.30.360.50	Gene3D:3.60.90.10	MapMan:8.2.1	UniProt:C5XCY7
EnsemblPlants:EER98924	ProteinID:EER98924	ProteinID:EER98924.1	GO:GO:0003674	GO:GO:0003824	GO:GO:0004014
GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0005829	GO:GO:0006139
GO:GO:0006557	GO:GO:0006596	GO:GO:0006597	GO:GO:0008150	GO:GO:0008152	GO:GO:0008295
GO:GO:0009058	GO:GO:0009987	GO:GO:0016829	GO:GO:0016831	PFAM:PF01536	PIRSF:PIRSF001355
ScanProsite:PS01336	PANTHER:PTHR11570	PANTHER:PTHR11570:SF3	MetaCyc:PWY-6834	InterPro:S-AdoMet_deCO2ase_CS	InterPro:S-AdoMet_deCO2ase_core
InterPro:S-AdoMet_decarboxylase	EnsemblPlantsGene:SORBI_3002G206700	SUPFAM:SSF56276	unigene:Sbi.18545	TIGRFAMs:TIGR00535	UniParc:UPI0001A84040
RefSeq:XP_002462403.1	SEG:seg	:	:	:	:

Description

hypothetical protein

Coordinates

chr2:-:59827099..59828686

Molecular Weight (calculated)

42802.7 Da

IEP (calculated)

4.513

GRAVY (calculated)

-0.052

Length

395 amino acids

Sequence
(BLAST)

001: MAMSSADSWG SSPTSPIGFE GYEKRLEITF SDAPVFEDPC GLGLRALSRE QIDSFLDLAR CTIVSQLSNK NFDSYVLSES SLFVYPHKVV LKTCGTTKLL
101: LSIPRILELA AGLSLPVLSA KYSRGTFIFP GAQPAPHRSF SEEVSVLNGF FGNLKSGGNA YVIGDTFKPN KKWHVYYATE EPEHPMVTLE MCMTGLDAKK
201: AAVFFKNSDD GSCTSAKEMT KLSGISEIIP EMEICDFEFD PCGYSMNGVF GPAASTIHVT PEEGFSYASY EAMNFNPSSL VYSDVIKRVL AGFSPSEFSV
301: AVTIFGGRGF AKSWAKGADV DSYMCDDLVE QELPGGGLLM YQSFTAVASG TVSPRSTLEM DGWSSDGMET ATKSDDLCIG CWDVAKKVVK KDVDA

Best Arabidopsis Sequence Match ( AT3G02470.3 )
(BLAST)

001: MALSAIGFEG YEKRLEVTFF EPSIFQDSKG LGLRALTKSQ LDEILTPAAC TIVSSLSNDQ LDSYVLSESS FFVYPYKVII KTCGTTKLLL SIPPLLKLAG
101: ELSLSVKSVK YTRGSFLCPG GQPFPHRSFS EEVSVLDGHF TQLGLNSVAY LMGNDDETKK WHVYAASAQD SSNCNNNVYT LEMCMTGLDR EKAAVFYKDE
201: ADKTGSMTDN SGIRKILPKS EICDFEFEPC GYSMNSIEGD AISTIHVTPE DGFSYASFEA VGYDFNTLDL SQLVTRVLSC FEPKQFSVAV HSSVGANSYK
301: PEITVDLEDY GCRERTFESL GEESGTVMYQ TFEKLGKYCG SPRSTLKCEW SSNNSCSSED EKDEGI

Arabidopsis Description

SAMDC1S-adenosylmethionine decarboxylase proenzyme 1 [Source:UniProtKB/Swiss-Prot;Acc:Q96286]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.