CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 2
cytosol 2
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDX69487	Canola	cytosol	92.37	92.12
AT5G15950.2	Thale cress	cytosol	89.92	91.16
CDX70666	Canola	cytosol	83.38	84.3
CDX78666	Canola	cytosol	68.66	83.44
CDY71278	Canola	cytosol	81.2	82.09
CDX74257	Canola	cytosol	81.47	81.25
CDX91992	Canola	cytosol	81.2	81.2
CDY57536	Canola	cytosol	77.38	78.02
CDY71710	Canola	cytosol, nucleus, plastid	81.2	69.46
KRH01466	Soybean	cytosol, golgi, nucleus	61.58	62.95
KRH45175	Soybean	cytosol	61.58	62.95
Solyc02g089610.1.1	Tomato	cytosol	61.58	62.43
PGSC0003DMT400026053	Potato	cytosol	61.31	62.15
CDY43235	Canola	cytosol, plastid	77.93	61.77
VIT_14s0083g00580.t01	Wine grape	cytosol	60.76	55.06
TraesCS6A01G219500.1	Wheat	cytosol	50.14	47.42
HORVU6Hr1G056110.1	Barley	cytosol	50.14	47.3
TraesCS6B01G249000.1	Wheat	cytosol	49.86	47.16
TraesCS6D01G202500.1	Wheat	cytosol	49.86	47.16
TraesCS5B01G220000.1	Wheat	cytosol, nucleus, peroxisome	49.86	46.68
TraesCS2B01G372900.1	Wheat	cytosol	49.59	46.55
EES05409	Sorghum	plastid	50.41	46.48
TraesCS5D01G228900.1	Wheat	cytosol, nucleus, peroxisome	49.59	46.43
Os02t0611200-01	Rice	cytosol	49.86	46.33
TraesCS5A01G221200.1	Wheat	cytosol	49.59	46.19
Os09t0424300-03	Rice	cytosol	49.32	46.17
Zm00001d051056_P001	Maize	plastid	49.59	46.08
EER98924	Sorghum	cytosol	49.32	45.82
Zm00001d025773_P002	Maize	cytosol, plastid	49.05	45.8
Zm00001d020543_P001	Maize	cytosol	48.5	45.41
GSMUA_Achr9P18460_001	Banana	cytosol	52.32	45.18
Zm00001d003157_P001	Maize	cytosol	49.05	45.0
Os04t0498600-01	Rice	cytosol	48.77	44.97
TraesCS2A01G355400.1	Wheat	cytosol, endoplasmic reticulum, extracellular, golgi, peroxisome, plasma membrane, plastid, vacuole	49.32	43.61
TraesCS2D01G352900.1	Wheat	cytosol	48.23	43.28
HORVU5Hr1G064040.8	Barley	cytosol	49.86	41.4
HORVU2Hr1G086140.5	Barley	cytosol	49.59	40.44
CDY49835	Canola	cytosol	35.97	40.37
OQU81878	Sorghum	cytosol	49.32	39.78
CDY13929	Canola	cytosol	36.78	39.02
CDX92572	Canola	cytosol	36.78	39.02
CDX88906	Canola	cytosol	36.51	38.62
CDX70856	Canola	cytosol	36.24	38.33
CDY47189	Canola	cytosol	35.69	37.64
CDY54323	Canola	cytosol, nucleus, plastid	7.63	25.23
CDX85819	Canola	cytosol	8.17	23.44
CDY63462	Canola	plastid	9.26	22.08
CDY33352	Canola	plastid	8.99	21.43
CDY06772	Canola	nucleus	8.99	20.25
CDX99815	Canola	cytosol	8.45	16.85
CDX84130	Canola	cytosol	5.72	16.8
CDY17081	Canola	cytosol	8.45	16.58

Protein Annotations

KEGG:00270+4.1.1.50	KEGG:00330+4.1.1.50	Gene3D:3.30.360.50	Gene3D:3.60.90.10	MapMan:8.2.1	GO:A0A078GP96
UniProt:A0A078GP96	EnsemblPlants:CDY26478	ProteinID:CDY26478	ProteinID:CDY26478.1	GO:GO:0003674	GO:GO:0003824
GO:GO:0004014	GO:GO:0006139	GO:GO:0006557	GO:GO:0006596	GO:GO:0006597	GO:GO:0008150
GO:GO:0008152	GO:GO:0008295	GO:GO:0009058	GO:GO:0009987	GO:GO:0016829	GO:GO:0016831
EnsemblPlantsGene:GSBRNA2T00035283001	PFAM:PF01536	PIRSF:PIRSF001355	ScanProsite:PS01336	PANTHER:PTHR11570	PANTHER:PTHR11570:SF14
MetaCyc:PWY-6834	InterPro:S-AdoMet_deCO2ase_CS	InterPro:S-AdoMet_deCO2ase_core	InterPro:S-AdoMet_decarboxylase	SUPFAM:SSF56276	TIGRFAMs:TIGR00535
UniPathway:UPA00331	UniParc:UPI0004EDF712	:	:	:	:

Description

BnaC09g41900DS-adenosylmethionine decarboxylase proenzyme [Source:UniProtKB/TrEMBL;Acc:A0A078GP96]

Coordinates

chrLK032190:+:350499..351750

Molecular Weight (calculated)

40421.5 Da

IEP (calculated)

4.511

GRAVY (calculated)

-0.225

Length

367 amino acids

Sequence
(BLAST)

001: MSLSAIGFEG YEKRLEVSFF EPSLFLDTHG KGLRALPKSH VDEILAPAEC TIVSSLSNDE LDSYVLSESS LFIFPYKIII KTCGTTKLLL SIEPLLRLAG
101: ELSLEVKSVR YTRGSFLCPG GQPFPHRNFS EEVSVLDGLF AKMGLSSVAY LMGDDDETKK WHVYSASAPA KNTNSNNNVY TLEMCMTGLD KDKASVFYKN
201: ESSSAGSMTD NSGIRKILPQ SQICDFEFEP CGYSMNSVEG GAISTIHVTP EDGFSYASFE AVGYDFTTMD LSHLVSKVLT CFEPKQFSVA VHSSVAQKSY
301: DSGLSVDLED YGCRETTVES LGEERGTVMY QRFEKLGMYC GSPRSTLKCE WSSNSSCTSE DEKEEGI

Best Arabidopsis Sequence Match ( AT5G15950.1 )
(BLAST)

001: MAMSAIGFEG YEKRLEVTFF EPGLFLDTQG KGLRALAKSQ IDEILQPAEC TIVSSLSNDQ LDSYVLSESS LFIFPYKIVI KTCGTTKLLL SIEPLLRLAG
101: ELSLDVKAVR YTRGSFLCPG GQPFPHRNFS EEVSVLDGHF AKLGLSSVAY LMGNDDETKK WHVYSASSAN SNNKNNVYTL EMCMTGLDKD KASVFYKNES
201: SSAGSMTDNS GIRKILPQSQ ICDFEFEPCG YSMNSIEGDA ISTIHVTPED GFSYASFEAV GYDFTTMDLS HLVSKVLTCF KPKQFSVAVH STVAQKSYDS
301: GLSVDLDDYG CKESTMESLG EERGTVMYQR FEKLGRYCGS PRSTLKCEWS SNSSCNSEDE KE

Arabidopsis Description

SAMDC2S-adenosylmethionine decarboxylase proenzyme 2 [Source:UniProtKB/Swiss-Prot;Acc:Q9S7T9]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.