Factsheet for HORVU6Hr1G056110.1

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 2
plastid 2
cytosol 3
plasma membrane 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS6B01G249000.1	Wheat	cytosol	94.09	94.33
TraesCS6D01G202500.1	Wheat	cytosol	91.52	91.75
TraesCS6A01G219500.1	Wheat	cytosol	91.26	91.49
Os02t0611200-01	Rice	cytosol	79.69	78.48
EES05409	Sorghum	plastid	76.61	74.87
Zm00001d051056_P001	Maize	plastid	75.06	73.92
GSMUA_Achr9P13400_001	Banana	cytosol	59.9	64.72
GSMUA_Achr5P24230_001	Banana	cytosol, peroxisome, plastid	65.3	64.14
GSMUA_Achr3P04790_001	Banana	cytosol	60.93	63.54
GSMUA_Achr7P19450_001	Banana	cytosol, plastid	61.44	62.4
HORVU2Hr1G086140.5	Barley	cytosol	71.98	62.22
HORVU5Hr1G064040.8	Barley	cytosol	63.24	55.66
AT3G25570.2	Thale cress	cytosol	49.87	55.59
Solyc02g089610.1.1	Tomato	cytosol	51.41	55.25
PGSC0003DMT400026053	Potato	cytosol	51.16	54.97
PGSC0003DMT400041339	Potato	cytosol	51.16	54.82
PGSC0003DMT400019451	Potato	cytosol	50.64	54.72
Solyc01g010050.2.1	Tomato	cytosol	51.16	54.67
Solyc05g010420.1.1	Tomato	cytosol	50.13	54.17
VIT_11s0037g00950.t01	Wine grape	cytosol	53.47	53.75
AT5G15950.2	Thale cress	cytosol	48.33	51.93
CDY71278	Canola	cytosol	48.07	51.52
CDY57536	Canola	cytosol	48.07	51.37
Bra039176.1-P	Field mustard	cytosol	48.07	51.37
AT3G02470.1	Thale cress	cytosol	48.07	51.09
CDX74257	Canola	cytosol	48.33	51.09
CDX91992	Canola	cytosol	48.07	50.95
Bra008662.1-P	Field mustard	cytosol	48.07	50.82
KRH02991	Soybean	cytosol	46.27	50.28
CDY26478	Canola	cytosol	47.3	50.14
CDX69487	Canola	cytosol	47.3	50.0
Bra006334.1-P	Field mustard	cytosol	38.82	50.0
CDX78666	Canola	cytosol	38.56	49.67
CDX70666	Canola	cytosol	46.02	49.31
Bra021458.1-P	Field mustard	nucleus	48.07	43.59
CDY71710	Canola	cytosol, nucleus, plastid	48.07	43.59
Bra001046.1-P	Field mustard	nucleus	48.07	42.12
CDY43235	Canola	cytosol, plastid	48.33	40.6
AT3G17717.1	Thale cress	cytosol	12.34	37.8
Bra021271.1-P	Field mustard	cytosol	28.79	34.25
CDY49835	Canola	cytosol	28.28	33.64
CDY63462	Canola	plastid	7.97	20.13
CDY33352	Canola	plastid	7.71	19.48
CDY06772	Canola	nucleus	7.97	19.02
CDX99815	Canola	cytosol	7.71	16.3
CDY17081	Canola	cytosol	7.71	16.04

Protein Annotations

KEGG:00270+4.1.1.50	KEGG:00330+4.1.1.50	Gene3D:3.30.360.50	Gene3D:3.60.90.10	MapMan:8.2.1	EMBL:AK368996
UniProt:F2DYM7	GO:GO:0003674	GO:GO:0003824	GO:GO:0004014	GO:GO:0006139	GO:GO:0006557
GO:GO:0006596	GO:GO:0006597	GO:GO:0008150	GO:GO:0008152	GO:GO:0008295	GO:GO:0009058
GO:GO:0009987	GO:GO:0016829	GO:GO:0016831	EnsemblPlantsGene:HORVU6Hr1G056110	EnsemblPlants:HORVU6Hr1G056110.1	PFAM:PF01536
PIRSF:PIRSF001355	ScanProsite:PS01336	PANTHER:PTHR11570	PANTHER:PTHR11570:SF3	InterPro:S-AdoMet_deCO2ase_CS	InterPro:S-AdoMet_deCO2ase_core
InterPro:S-AdoMet_decarboxylase	SUPFAM:SSF56276	TIGRFAMs:TIGR00535	UniParc:UPI0002007562	SEG:seg	:

Description

S-adenosylmethionine decarboxylase proenzyme [Source:UniProtKB/TrEMBL;Acc:F2DYM7]

Coordinates

chrchr6H:-:359587382..359589245

Molecular Weight (calculated)

42310.1 Da

IEP (calculated)

4.666

GRAVY (calculated)

-0.123

Length

389 amino acids

Sequence
(BLAST)

001: MAVSAIGFEG YEKRLEITFS EASVFTDPNG RGLRALSRPQ IDSVLDLAKC TIVSELSNEK FDSYVLSESS LFVYPYKVVI KTCGTTKLLL AIPRILELAE
101: ELALPLAAVK YSRGAFIFPE AQPSPHKNFS DEVAFLNGYF GGLKSGGNAY VIGDPAKPGQ KWHVYYATQQ PEQPVVNLEM CMTGLDKKKA SVFFKTSADG
201: HTSCAKEMTK LSGISDIIPE MEICDFDFEP CGYSMNAIHG SAFSTIHVTP EDGFSYGSYE VMGLDPASMA YGDLVKRVLR SFGPSEFSVA VTIFGCPSLA
301: GTWGERLNVG VYDSTNMVVQ ELPGGGSLIY QSFTAAGEDS SGSPRSVLNC YVDGNLQSAS KVDAFLCWED DAAQEKDERR GDGKKMRSF

Best Arabidopsis Sequence Match ( AT3G25570.2 )
(BLAST)

001: MAVSATGFEG FEKRLEISFF ETTDFLDPQG KSLRSLTKSQ LDEILTPAEC TIVSSLTNSF VDSYVLSESS LFVYPYKIII KTCGTTKLLL SIPHILRLAD
101: SLCLTVKSVR YTRGSFIFPG AQSYPHRSFS EEVALLDDYF GKLNAGSKAF VMGGSDNNPQ RWHVYSASST EESAVCDKPV YTLEMCMTGL DNIKASVFFK
201: TNSVSASEMT ISSGIRNILP GSEICDFNFE PCGYSMNSIE GDAVSTIHVT PEDGFSYASF ETVGYDLKAL NFKELVDRVL VCFGPEEFSV AVHANLGTEV
301: LASDCVADVN GYFSQERELE ELGLGGSVLY QRFVKTVECC SPKSTLGFC

Arabidopsis Description

SAMDC3S-adenosylmethionine decarboxylase proenzyme 3 [Source:UniProtKB/Swiss-Prot;Acc:Q9LSU6]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.