Factsheet for Bra001046.1-P

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 3
plastid 1
cytosol 1
plasma membrane 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDX74257	Canola	cytosol	82.21	99.18
AT3G02470.1	Thale cress	cytosol	76.58	92.9
Bra021458.1-P	Field mustard	nucleus	87.61	90.68
Bra039176.1-P	Field mustard	cytosol	73.87	90.11
Bra008662.1-P	Field mustard	cytosol	67.57	81.52
Bra006334.1-P	Field mustard	cytosol	52.7	77.48
VIT_14s0083g00580.t01	Wine grape	cytosol	58.56	64.2
Solyc02g089610.1.1	Tomato	cytosol	51.13	62.71
KRH01466	Soybean	cytosol, golgi, nucleus	50.68	62.67
PGSC0003DMT400026053	Potato	cytosol	50.9	62.43
KRH45175	Soybean	cytosol	49.77	61.56
GSMUA_Achr9P18460_001	Banana	cytosol	48.2	50.35
HORVU5Hr1G064040.8	Barley	cytosol	48.87	49.09
Zm00001d020543_P001	Maize	cytosol	43.24	48.98
EER98924	Sorghum	cytosol	43.24	48.61
TraesCS5B01G220000.1	Wheat	cytosol, nucleus, peroxisome	42.79	48.47
TraesCS5D01G228900.1	Wheat	cytosol, nucleus, peroxisome	42.57	48.21
TraesCS6B01G249000.1	Wheat	cytosol	42.12	48.2
HORVU6Hr1G056110.1	Barley	cytosol	42.12	48.07
TraesCS5A01G221200.1	Wheat	cytosol	42.57	47.97
Os09t0424300-03	Rice	cytosol	42.34	47.96
TraesCS6D01G202500.1	Wheat	cytosol	41.89	47.94
OQU81878	Sorghum	cytosol	49.1	47.91
TraesCS6A01G219500.1	Wheat	cytosol	41.67	47.68
Os02t0611200-01	Rice	cytosol	42.34	47.59
HORVU2Hr1G086140.5	Barley	cytosol	48.2	47.56
TraesCS2D01G352900.1	Wheat	cytosol	43.69	47.43
EES05409	Sorghum	plastid	42.12	46.98
Zm00001d025773_P002	Maize	cytosol, plastid	41.44	46.82
TraesCS2B01G372900.1	Wheat	cytosol	41.22	46.8
Os04t0498600-01	Rice	cytosol	41.67	46.48
Zm00001d051056_P001	Maize	plastid	41.22	46.33
Zm00001d003157_P001	Maize	cytosol	40.99	45.5
TraesCS2A01G355400.1	Wheat	cytosol, endoplasmic reticulum, extracellular, golgi, peroxisome, plasma membrane, plastid, vacuole	41.22	44.1
Bra021271.1-P	Field mustard	cytosol	31.76	43.12
Bra023699.1-P	Field mustard	cytosol	32.43	40.79
Bra006485.1-P	Field mustard	cytosol	31.08	39.88
Bra002194.1-P	Field mustard	cytosol	31.08	39.88

Protein Annotations

KEGG:00270+4.1.1.50	KEGG:00330+4.1.1.50	Gene3D:3.30.360.50	Gene3D:3.60.90.10	MapMan:8.2.1	InterPro:AdoMetDC_leader
EnsemblPlantsGene:Bra001046	EnsemblPlants:Bra001046.1	EnsemblPlants:Bra001046.1-P	GO:GO:0003674	GO:GO:0003824	GO:GO:0004014
GO:GO:0006597	GO:GO:0008150	GO:GO:0008152	GO:GO:0008295	GO:GO:0009058	GO:GO:0009987
UniProt:M4CA17	PFAM:PF01536	PFAM:PF08132	ScanProsite:PS01336	PANTHER:PTHR11570	PANTHER:PTHR11570:SF14
InterPro:S-AdoMet_deCO2ase_CS	InterPro:S-AdoMet_deCO2ase_core	InterPro:S-AdoMet_decarboxylase	SUPFAM:SSF56276	TIGRFAMs:TIGR00535	UniParc:UPI000254086C
SEG:seg	:	:	:	:	:

Description

AT3G02470 (E=8e-179) SAMDC | SAMDC (S-ADENOSYLMETHIONINE DECARBOXYLASE); adenosylmethionine decarboxylase

Coordinates

chrA03:+:14517085..14518567

Molecular Weight (calculated)

48846.3 Da

IEP (calculated)

4.654

GRAVY (calculated)

-0.278

Length

444 amino acids

Sequence
(BLAST)

001: MMESKGGNKK SSSSSSLFYE APLGYSIEDV RPNGGIKKFK SSVYSNVCFQ PYESCFLRDT LFLLGSPLPS FSPPTTMALS AIGFEGYEKR LEVSFFEPSF
101: FQDSKGLGLR ALTRSQLDEI LTPAACEIVS SLSNDHLDSY VLSESSFFVY PYKVIIKTCG TTKLLLSIPP LLKLAGELSL SVKSVKYTRG SFLCPGGQPF
201: PHRSFSEEVS VLDGHFTKLG LSSVAYLMGN DDENKKWHVY AASSAQTSSD CNNNVYTLEM CMTGLDKEKA SVFYKNETGG ENGSMTDNSG IRKILPKSQI
301: CDFEFEPCGY SMNSVEGDAI STIHVTPEDG FSYASFEAVG YDFSTLDLSQ LVTRVLSCFE PKQFSVAVHS SVGSNAYKPE ISVDLEDYGC RERTFESLGE
401: ESGTVMYQTF EKLGKYCGSP RSTLKCEWSS NNSCSSEDEK DEGI

Best Arabidopsis Sequence Match ( AT3G02470.3 )
(BLAST)

001: MALSAIGFEG YEKRLEVTFF EPSIFQDSKG LGLRALTKSQ LDEILTPAAC TIVSSLSNDQ LDSYVLSESS FFVYPYKVII KTCGTTKLLL SIPPLLKLAG
101: ELSLSVKSVK YTRGSFLCPG GQPFPHRSFS EEVSVLDGHF TQLGLNSVAY LMGNDDETKK WHVYAASAQD SSNCNNNVYT LEMCMTGLDR EKAAVFYKDE
201: ADKTGSMTDN SGIRKILPKS EICDFEFEPC GYSMNSIEGD AISTIHVTPE DGFSYASFEA VGYDFNTLDL SQLVTRVLSC FEPKQFSVAV HSSVGANSYK
301: PEITVDLEDY GCRERTFESL GEESGTVMYQ TFEKLGKYCG SPRSTLKCEW SSNNSCSSED EKDEGI

Arabidopsis Description

SAMDC1S-adenosylmethionine decarboxylase proenzyme 1 [Source:UniProtKB/Swiss-Prot;Acc:Q96286]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.