Factsheet for Bra021458.1-P

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 4
plastid 2
plasma membrane 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY71710	Canola	cytosol, nucleus, plastid	99.53	99.53
CDY71278	Canola	cytosol	83.92	99.17
AT3G02470.1	Thale cress	cytosol	79.72	93.44
Bra039176.1-P	Field mustard	cytosol	78.55	92.58
Bra001046.1-P	Field mustard	nucleus	90.68	87.61
Bra008662.1-P	Field mustard	cytosol	69.23	80.71
Bra006334.1-P	Field mustard	cytosol	55.01	78.15
VIT_14s0083g00580.t01	Wine grape	cytosol	60.61	64.2
KRH01466	Soybean	cytosol, golgi, nucleus	52.91	63.23
Solyc02g089610.1.1	Tomato	cytosol	52.21	61.88
KRH45175	Soybean	cytosol	51.75	61.84
PGSC0003DMT400026053	Potato	cytosol	51.98	61.6
GSMUA_Achr9P18460_001	Banana	cytosol	50.12	50.59
HORVU5Hr1G064040.8	Barley	cytosol	50.12	48.64
TraesCS6B01G249000.1	Wheat	cytosol	43.59	48.2
HORVU6Hr1G056110.1	Barley	cytosol	43.59	48.07
TraesCS5B01G220000.1	Wheat	cytosol, nucleus, peroxisome	43.82	47.96
TraesCS6D01G202500.1	Wheat	cytosol	43.36	47.94
TraesCS5D01G228900.1	Wheat	cytosol, nucleus, peroxisome	43.59	47.7
TraesCS6A01G219500.1	Wheat	cytosol	43.12	47.68
EER98924	Sorghum	cytosol	43.82	47.59
Os02t0611200-01	Rice	cytosol	43.82	47.59
TraesCS5A01G221200.1	Wheat	cytosol	43.59	47.46
Os09t0424300-03	Rice	cytosol	43.36	47.45
Zm00001d020543_P001	Maize	cytosol	43.36	47.45
TraesCS2D01G352900.1	Wheat	cytosol	44.76	46.94
Zm00001d025773_P002	Maize	cytosol, plastid	42.89	46.82
TraesCS2B01G372900.1	Wheat	cytosol	42.42	46.55
EES05409	Sorghum	plastid	43.12	46.48
OQU81878	Sorghum	cytosol	49.18	46.37
HORVU2Hr1G086140.5	Barley	cytosol	48.48	46.22
Os04t0498600-01	Rice	cytosol	42.66	45.98
Zm00001d051056_P001	Maize	plastid	42.19	45.82
Zm00001d003157_P001	Maize	cytosol	42.19	45.25
TraesCS2A01G355400.1	Wheat	cytosol, endoplasmic reticulum, extracellular, golgi, peroxisome, plasma membrane, plastid, vacuole	42.42	43.86
Bra021271.1-P	Field mustard	cytosol	32.87	43.12
Bra023699.1-P	Field mustard	cytosol	33.33	40.51
Bra006485.1-P	Field mustard	cytosol	32.17	39.88
Bra002194.1-P	Field mustard	cytosol	32.17	39.88

Protein Annotations

KEGG:00270+4.1.1.50	KEGG:00330+4.1.1.50	Gene3D:3.30.360.50	Gene3D:3.60.90.10	MapMan:8.2.1	InterPro:AdoMetDC_leader
EnsemblPlantsGene:Bra021458	EnsemblPlants:Bra021458.1	EnsemblPlants:Bra021458.1-P	GO:GO:0003674	GO:GO:0003824	GO:GO:0004014
GO:GO:0006597	GO:GO:0008150	GO:GO:0008152	GO:GO:0008295	GO:GO:0009058	GO:GO:0009987
UniProt:M4DY62	PFAM:PF01536	PFAM:PF08132	PIRSF:PIRSF001355	ScanProsite:PS01336	PANTHER:PTHR11570
PANTHER:PTHR11570:SF14	InterPro:S-AdoMet_deCO2ase_CS	InterPro:S-AdoMet_deCO2ase_core	InterPro:S-AdoMet_decarboxylase	SUPFAM:SSF56276	TIGRFAMs:TIGR00535
UniParc:UPI0002544914	SEG:seg	:	:	:	:

Description

AT3G02470 (E=7e-173) SAMDC | SAMDC (S-ADENOSYLMETHIONINE DECARBOXYLASE); adenosylmethionine decarboxylase

Coordinates

chrA01:+:25141829..25143306

Molecular Weight (calculated)

47257.6 Da

IEP (calculated)

4.741

GRAVY (calculated)

-0.273

Length

429 amino acids

Sequence
(BLAST)

001: MMESKGGKKK SSSSSSSLFY EAPLGYSIED ARPNGGIKKF KSSVYSNLRF CLVPQSNRSL LLLQGDMALS AIGFEGYEKR LEVSFFEPSI FQDSKGLGLR
101: ALTRSQLDEI LTPAACEIVS SLSNDHLDSY VLSESSFFVY PYKVIIKTCG TTKLLLSIPP LLKLAGELSL SVESVKYTRG SFLCPGGQPF PHRSFSEEVS
201: VLDGHFTKLG LNSVAYLMGN DDETKKWHVY AASSAQSSSN NNVYTLEMCM TGLDREKASV FYKNGETGSM TDNSGIRKIL PQSQICDFEF EPCGYSMNSI
301: EGDAISTIHV TPEDGFSYAS FEAVGYDFNT IDLSQLVTRV LSCFEPKQFS VAVHSSVGVN AYKPEISVDL EDYGCRERTF ESLGEESGTV MYQTFEKLGK
401: YCGSPRSTLK CEWSSNNSCS SEDEKDEGI

Best Arabidopsis Sequence Match ( AT3G02470.3 )
(BLAST)

001: MALSAIGFEG YEKRLEVTFF EPSIFQDSKG LGLRALTKSQ LDEILTPAAC TIVSSLSNDQ LDSYVLSESS FFVYPYKVII KTCGTTKLLL SIPPLLKLAG
101: ELSLSVKSVK YTRGSFLCPG GQPFPHRSFS EEVSVLDGHF TQLGLNSVAY LMGNDDETKK WHVYAASAQD SSNCNNNVYT LEMCMTGLDR EKAAVFYKDE
201: ADKTGSMTDN SGIRKILPKS EICDFEFEPC GYSMNSIEGD AISTIHVTPE DGFSYASFEA VGYDFNTLDL SQLVTRVLSC FEPKQFSVAV HSSVGANSYK
301: PEITVDLEDY GCRERTFESL GEESGTVMYQ TFEKLGKYCG SPRSTLKCEW SSNNSCSSED EKDEGI

Arabidopsis Description

SAMDC1S-adenosylmethionine decarboxylase proenzyme 1 [Source:UniProtKB/Swiss-Prot;Acc:Q96286]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.