Factsheet for TraesCS2A01G355400.1

Subcellular Localization

min:

: max

Winner_takes_all: peroxisome, extracellular, endoplasmic reticulum, vacuole, plastid, cytosol, plasma membrane, golgi

Predictor Summary:

plastid 2
peroxisome 1
extracellular 2
endoplasmic reticulum 2
vacuole 2
plasma membrane 2
golgi 2
cytosol 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol, peroxisome, plastid, secretory
Any Predictor:	cytosol, peroxisome, plastid, secretory
iPSORT:	plastid
MultiLoc:	peroxisome
PProwler:	secretory
TargetP:	secretory
WoLF PSORT:	plastid
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS2B01G372900.1	Wheat	cytosol	92.05	97.7
TraesCS2D01G352900.1	Wheat	cytosol	91.57	92.91
HORVU2Hr1G086140.5	Barley	cytosol	91.81	84.67
Os04t0498600-01	Rice	cytosol	76.39	79.65
Zm00001d003157_P001	Maize	cytosol	75.9	78.75
Zm00001d025773_P002	Maize	cytosol, plastid	71.81	75.83
TraesCS6A01G219500.1	Wheat	cytosol	67.71	72.42
OQU81878	Sorghum	cytosol	75.66	69.01
GSMUA_Achr9P13400_001	Banana	cytosol	57.11	65.83
GSMUA_Achr5P24230_001	Banana	cytosol, peroxisome, plastid	62.17	65.15
GSMUA_Achr7P19450_001	Banana	cytosol, plastid	59.04	63.97
GSMUA_Achr3P04790_001	Banana	cytosol	57.35	63.81
TraesCS5A01G221200.1	Wheat	cytosol	59.52	62.69
Solyc01g010050.2.1	Tomato	cytosol	48.19	54.95
PGSC0003DMT400041339	Potato	cytosol	47.95	54.82
PGSC0003DMT400019451	Potato	cytosol	47.47	54.72
Solyc02g089610.1.1	Tomato	cytosol	47.71	54.7
PGSC0003DMT400026053	Potato	cytosol	47.47	54.42
Solyc05g010420.1.1	Tomato	cytosol	46.99	54.17
AT3G25570.2	Thale cress	cytosol	45.54	54.15
VIT_11s0037g00950.t01	Wine grape	cytosol	49.4	52.97
AT5G15950.2	Thale cress	cytosol	44.34	50.83
Bra008662.1-P	Field mustard	cytosol	44.34	50.0
CDY71278	Canola	cytosol	43.61	49.86
AT3G02470.1	Thale cress	cytosol	43.86	49.73
KRH02991	Soybean	cytosol	42.65	49.44
CDY26478	Canola	cytosol	43.61	49.32
CDX74257	Canola	cytosol	43.61	49.18
CDX69487	Canola	cytosol	43.61	49.18
Bra039176.1-P	Field mustard	cytosol	43.13	49.18
CDY57536	Canola	cytosol	43.13	49.18
CDX91992	Canola	cytosol	43.37	49.05
Bra006334.1-P	Field mustard	cytosol	35.18	48.34
CDX70666	Canola	cytosol	42.17	48.21
CDX78666	Canola	cytosol	34.94	48.01
Bra021458.1-P	Field mustard	nucleus	43.86	42.42
CDY71710	Canola	cytosol, nucleus, plastid	43.86	42.42
Bra001046.1-P	Field mustard	nucleus	44.1	41.22
AT3G17717.1	Thale cress	cytosol	12.53	40.94
CDY43235	Canola	cytosol, plastid	43.86	39.31
Bra021271.1-P	Field mustard	cytosol	26.51	33.64
CDY49835	Canola	cytosol	26.02	33.03
CDY63462	Canola	plastid	6.75	18.18
CDY33352	Canola	plastid	6.75	18.18
CDY06772	Canola	nucleus	6.75	17.18
CDX99815	Canola	cytosol	6.75	15.22
CDY17081	Canola	cytosol	6.75	14.97

Protein Annotations

KEGG:00270+4.1.1.50	KEGG:00330+4.1.1.50	Gene3D:3.30.360.50	Gene3D:3.60.90.10	MapMan:8.2.1	GO:GO:0003674
GO:GO:0003824	GO:GO:0004014	GO:GO:0006597	GO:GO:0008150	GO:GO:0008152	GO:GO:0008295
GO:GO:0009058	GO:GO:0009987	PFAM:PF01536	PIRSF:PIRSF001355	ScanProsite:PS01336	PANTHER:PTHR11570
PANTHER:PTHR11570:SF3	InterPro:S-AdoMet_deCO2ase_CS	InterPro:S-AdoMet_deCO2ase_core	InterPro:S-AdoMet_decarboxylase	SUPFAM:SSF56276	TIGRFAMs:TIGR00535
EnsemblPlantsGene:TraesCS2A01G355400	EnsemblPlants:TraesCS2A01G355400.1	SEG:seg	:	:	:

Description

No Description!

Coordinates

chr2A:-:598161186..598162492

Molecular Weight (calculated)

45415.1 Da

IEP (calculated)

4.719

GRAVY (calculated)

0.002

Length

415 amino acids

Sequence
(BLAST)

001: MQFYSDSFSL CSSLLCSLTR TATMAAPTSA IGFEGYEKRL EITFSEASIF ADPHGRGLRA LSRAQIDSVL DLARCTIVSE LSNKDFDSYV LSESSLFIYS
101: QKIVIKTCGT TMLLLTIPRI LELAEELCMP LAAVKYSRGM FIFPGAQPAP HRSFSEEVDV LNRYFGHLKS GGNAYVIGDP AKPGQKWHIY YATEQPEQPM
201: VTLEMCMTGL DKKKASVFFK TQADSHVSCA KEMTKLSGIS DIIPEMEVCD FDFEPCGYSM NAINGSAVST IHVTPEDGFS YASYEVMGMD ASALAYGDIV
301: KRVLRCFGPS EFSAAVTIFG GRGHAATWGK KLDAEAYDCN NVVEQELPCG GVLIYQSFTV NEEVAVSAGS PRSVFHCFEA ESVHSHPLVK EGKLANLLAW
401: RAEEDSLEEG AVLCE

Best Arabidopsis Sequence Match ( AT3G25570.2 )
(BLAST)

001: MAVSATGFEG FEKRLEISFF ETTDFLDPQG KSLRSLTKSQ LDEILTPAEC TIVSSLTNSF VDSYVLSESS LFVYPYKIII KTCGTTKLLL SIPHILRLAD
101: SLCLTVKSVR YTRGSFIFPG AQSYPHRSFS EEVALLDDYF GKLNAGSKAF VMGGSDNNPQ RWHVYSASST EESAVCDKPV YTLEMCMTGL DNIKASVFFK
201: TNSVSASEMT ISSGIRNILP GSEICDFNFE PCGYSMNSIE GDAVSTIHVT PEDGFSYASF ETVGYDLKAL NFKELVDRVL VCFGPEEFSV AVHANLGTEV
301: LASDCVADVN GYFSQERELE ELGLGGSVLY QRFVKTVECC SPKSTLGFC

Arabidopsis Description

SAMDC3S-adenosylmethionine decarboxylase proenzyme 3 [Source:UniProtKB/Swiss-Prot;Acc:Q9LSU6]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.