CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 2
cytosol 2
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d003157_P001	Maize	cytosol	78.02	88.75
Zm00001d025773_P002	Maize	cytosol, plastid	75.38	87.28
Os04t0498600-01	Rice	cytosol	74.29	84.92
TraesCS2B01G372900.1	Wheat	cytosol	69.23	80.56
TraesCS2D01G352900.1	Wheat	cytosol	71.65	79.71
HORVU2Hr1G086140.5	Barley	cytosol	76.7	77.56
TraesCS2A01G355400.1	Wheat	cytosol, endoplasmic reticulum, extracellular, golgi, peroxisome, plasma membrane, plastid, vacuole	69.01	75.66
EES05409	Sorghum	plastid	65.49	74.87
GSMUA_Achr9P13400_001	Banana	cytosol	54.29	68.61
GSMUA_Achr5P24230_001	Banana	cytosol, peroxisome, plastid	58.46	67.17
GSMUA_Achr3P04790_001	Banana	cytosol	53.41	65.15
EER98924	Sorghum	cytosol	56.04	64.56
GSMUA_Achr7P19450_001	Banana	cytosol, plastid	53.85	63.97
Solyc01g010050.2.1	Tomato	cytosol	44.84	56.04
AT3G25570.2	Thale cress	cytosol	42.86	55.87
PGSC0003DMT400041339	Potato	cytosol	44.4	55.65
VIT_11s0037g00950.t01	Wine grape	cytosol	47.03	55.3
PGSC0003DMT400019451	Potato	cytosol	42.86	54.17
Solyc05g010420.1.1	Tomato	cytosol	42.64	53.89
Solyc02g089610.1.1	Tomato	cytosol	42.86	53.87
PGSC0003DMT400026053	Potato	cytosol	42.64	53.59
AT5G15950.2	Thale cress	cytosol	40.66	51.1
KRH02991	Soybean	cytosol	39.78	50.56
CDY71278	Canola	cytosol	40.22	50.41
AT3G02470.1	Thale cress	cytosol	40.22	50.0
CDX74257	Canola	cytosol	40.44	50.0
Bra008662.1-P	Field mustard	cytosol	40.44	50.0
CDY57536	Canola	cytosol	39.78	49.73
Bra039176.1-P	Field mustard	cytosol	39.78	49.73
CDX91992	Canola	cytosol	40.0	49.59
CDX69487	Canola	cytosol	40.0	49.46
CDY71710	Canola	cytosol, nucleus, plastid	46.59	49.42
CDY26478	Canola	cytosol	39.78	49.32
Bra021458.1-P	Field mustard	nucleus	46.37	49.18
Bra001046.1-P	Field mustard	nucleus	47.91	49.1
CDX70666	Canola	cytosol	38.9	48.76
CDX78666	Canola	cytosol	32.31	48.68
Bra006334.1-P	Field mustard	cytosol	32.31	48.68
CDY43235	Canola	cytosol, plastid	46.59	45.79
AT3G17717.1	Thale cress	cytosol	10.99	39.37
CDY33352	Canola	plastid	11.65	34.42
CDY63462	Canola	plastid	11.21	33.12
Bra021271.1-P	Field mustard	cytosol	23.52	32.72
CDY49835	Canola	cytosol	23.08	32.11
CDX99815	Canola	cytosol	11.65	28.8
CDY17081	Canola	cytosol	11.65	28.34
CDY06772	Canola	nucleus	10.11	28.22

Protein Annotations

KEGG:00270+4.1.1.50	KEGG:00330+4.1.1.50	Gene3D:3.30.360.50	Gene3D:3.60.90.10	MapMan:8.2.1	UniProt:A0A1Z5RDR4
InterPro:AdoMetDC_leader	GO:GO:0003674	GO:GO:0003824	GO:GO:0004014	GO:GO:0006139	GO:GO:0006557
GO:GO:0006596	GO:GO:0006597	GO:GO:0008150	GO:GO:0008152	GO:GO:0008295	GO:GO:0009058
GO:GO:0009987	GO:GO:0016829	GO:GO:0016831	EnsemblPlants:OQU81878	ProteinID:OQU81878	ProteinID:OQU81878.1
PFAM:PF01536	PFAM:PF08132	ScanProsite:PS01336	PANTHER:PTHR11570	PANTHER:PTHR11570:SF3	InterPro:S-AdoMet_deCO2ase_CS
InterPro:S-AdoMet_deCO2ase_core	InterPro:S-AdoMet_decarboxylase	EnsemblPlantsGene:SORBI_3006G135600	SUPFAM:SSF56276	TIGRFAMs:TIGR00535	UniParc:UPI000B8BB2D7
SEG:seg	:	:	:	:	:

Description

hypothetical protein

Coordinates

chr6:+:49858345..49859957

Molecular Weight (calculated)

49465.9 Da

IEP (calculated)

4.875

GRAVY (calculated)

-0.116

Length

455 amino acids

Sequence
(BLAST)

001: MESKGGKKSS SSRSMMYEAP LGYSIEDVRP AGGVKKFQSA AYSNVRSNHH TLCSDSPAPM AVLSAADAPP VSAIGFEGYE KRLEITFSEA PVFADPHGRG
101: LRALSRAQID SVLDLARCTI VSELSNKDFD SYVLSESSLF IYPLKIVIKT CGTTKLLLTI PRILELAEEL SMPLAAVKYS RGTFIFPGAQ PAPHRSFSEE
201: VAALNRYFGG LKSGGNAYVI GDPARPGQKW HIYYATEYPE QPVVNLEMCM TGLDKKKASV FFKTNADGNT TCAKEMTKLS GISEIIPEME ICDFDFEPCG
301: YSMNAIHGSA FSTIHVTPED GFSYASYEVM GFDATALSYG DLVKRVLRCF GPLEFSVAVT IFGGRGQAGT WGKQLGAEVY DCNNMVEQEL PGGGLLIYQS
401: FCAAEDAVAT SPKSVLHCFE GVNMENAPPV KDRKLANLLC WEEVDAMEKD GVLDE

Best Arabidopsis Sequence Match ( AT3G25570.2 )
(BLAST)

001: MAVSATGFEG FEKRLEISFF ETTDFLDPQG KSLRSLTKSQ LDEILTPAEC TIVSSLTNSF VDSYVLSESS LFVYPYKIII KTCGTTKLLL SIPHILRLAD
101: SLCLTVKSVR YTRGSFIFPG AQSYPHRSFS EEVALLDDYF GKLNAGSKAF VMGGSDNNPQ RWHVYSASST EESAVCDKPV YTLEMCMTGL DNIKASVFFK
201: TNSVSASEMT ISSGIRNILP GSEICDFNFE PCGYSMNSIE GDAVSTIHVT PEDGFSYASF ETVGYDLKAL NFKELVDRVL VCFGPEEFSV AVHANLGTEV
301: LASDCVADVN GYFSQERELE ELGLGGSVLY QRFVKTVECC SPKSTLGFC

Arabidopsis Description

SAMDC3S-adenosylmethionine decarboxylase proenzyme 3 [Source:UniProtKB/Swiss-Prot;Acc:Q9LSU6]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.