Factsheet for TraesCS2B01G372900.1

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

cytosol 2
mitochondrion 1
cytoskeleton 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytoskeleton, cytosol
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	cytoskeleton
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS2D01G352900.1	Wheat	cytosol	96.42	92.18
TraesCS2A01G355400.1	Wheat	cytosol, endoplasmic reticulum, extracellular, golgi, peroxisome, plasma membrane, plastid, vacuole	97.7	92.05
HORVU2Hr1G086140.5	Barley	cytosol	97.44	84.67
Os04t0498600-01	Rice	cytosol	82.35	80.9
Zm00001d003157_P001	Maize	cytosol	81.07	79.25
Zm00001d025773_P002	Maize	cytosol, plastid	76.73	76.34
TraesCS6B01G249000.1	Wheat	cytosol	72.38	72.94
OQU81878	Sorghum	cytosol	80.56	69.23
GSMUA_Achr9P13400_001	Banana	cytosol	61.38	66.67
GSMUA_Achr5P24230_001	Banana	cytosol, peroxisome, plastid	67.01	66.16
GSMUA_Achr3P04790_001	Banana	cytosol	61.38	64.34
TraesCS5B01G220000.1	Wheat	cytosol, nucleus, peroxisome	64.19	64.03
GSMUA_Achr7P19450_001	Banana	cytosol, plastid	62.4	63.71
Solyc02g089610.1.1	Tomato	cytosol	50.9	54.97
PGSC0003DMT400026053	Potato	cytosol	50.64	54.7
Solyc01g010050.2.1	Tomato	cytosol	50.9	54.67
PGSC0003DMT400041339	Potato	cytosol	50.64	54.55
AT3G25570.2	Thale cress	cytosol	48.34	54.15
PGSC0003DMT400019451	Potato	cytosol	49.62	53.89
VIT_11s0037g00950.t01	Wine grape	cytosol	53.2	53.75
Solyc05g010420.1.1	Tomato	cytosol	49.1	53.33
AT5G15950.2	Thale cress	cytosol	47.31	51.1
CDY71278	Canola	cytosol	46.8	50.41
Bra008662.1-P	Field mustard	cytosol	47.31	50.27
AT3G02470.1	Thale cress	cytosol	46.8	50.0
KRH02991	Soybean	cytosol	45.78	50.0
CDX74257	Canola	cytosol	46.8	49.73
CDY57536	Canola	cytosol	46.29	49.73
Bra039176.1-P	Field mustard	cytosol	46.29	49.73
CDX91992	Canola	cytosol	46.55	49.59
CDY26478	Canola	cytosol	46.55	49.59
CDX69487	Canola	cytosol	46.55	49.46
Bra006334.1-P	Field mustard	cytosol	37.6	48.68
CDX70666	Canola	cytosol	45.01	48.48
CDX78666	Canola	cytosol	37.34	48.34
Bra021458.1-P	Field mustard	nucleus	46.55	42.42
CDY71710	Canola	cytosol, nucleus, plastid	46.55	42.42
AT3G17717.1	Thale cress	cytosol	13.55	41.73
Bra001046.1-P	Field mustard	nucleus	46.8	41.22
CDY43235	Canola	cytosol, plastid	46.55	39.31
Bra021271.1-P	Field mustard	cytosol	28.13	33.64
CDY49835	Canola	cytosol	27.62	33.03
CDY63462	Canola	plastid	6.91	17.53
CDY33352	Canola	plastid	6.65	16.88
CDY06772	Canola	nucleus	6.91	16.56
CDX99815	Canola	cytosol	6.65	14.13
CDY17081	Canola	cytosol	6.65	13.9

Protein Annotations

KEGG:00270+4.1.1.50	KEGG:00330+4.1.1.50	Gene3D:3.30.360.50	Gene3D:3.60.90.10	MapMan:8.2.1	GO:GO:0003674
GO:GO:0003824	GO:GO:0004014	GO:GO:0006597	GO:GO:0008150	GO:GO:0008152	GO:GO:0008295
GO:GO:0009058	GO:GO:0009987	PFAM:PF01536	PIRSF:PIRSF001355	ScanProsite:PS01336	PANTHER:PTHR11570
PANTHER:PTHR11570:SF3	InterPro:S-AdoMet_deCO2ase_CS	InterPro:S-AdoMet_deCO2ase_core	InterPro:S-AdoMet_decarboxylase	SUPFAM:SSF56276	TIGRFAMs:TIGR00535
EnsemblPlantsGene:TraesCS2B01G372900	EnsemblPlants:TraesCS2B01G372900.1	:	:	:	:

Description

No Description!

Coordinates

chr2B:+:531466716..531467891

Molecular Weight (calculated)

42723.0 Da

IEP (calculated)

4.658

GRAVY (calculated)

0.002

Length

391 amino acids

Sequence
(BLAST)

001: MAAPTSAIGF EGYEKRLEIT FSEASIFADP HGRGLRALSR AQIDSVLDLA RCTIVSELSN KDFDSYVLSE SSLFIYSQKI VIKTCGTTML LLTIPRILEL
101: AEELCMPLAA VKYSRGMFIF PGAQPAPHRS FSEEVDVLNR YFGHLKSGGN AYVIGDPAKP GQKWHIYYAT EQPEQPMVTL EMCMTGLDKK KASVFFKTSA
201: DGHVSCAKEM TKLSGISDII PEMEVCDFDF EPCGYSMNAI NGSAFSTIHV TPEDGFSYAS YEVMGMDASA LAYGDIVKRV LRCFGPSEFS VAVTIFGGRG
301: HAATWGKKLD AEAYDCNNVV EQELPCGGVL IYQSFAANEE VAVSAGSPRS VFHCFEAETV ESHPLVKEGK LANLLAWRAE DSLEEGVVLC E

Best Arabidopsis Sequence Match ( AT3G02470.1 )
(BLAST)

001: MALSAIGFEG YEKRLEVTFF EPSIFQDSKG LGLRALTKSQ LDEILTPAAC TIVSSLSNDQ LDSYVLSESS FFVYPYKVII KTCGTTKLLL SIPPLLKLAG
101: ELSLSVKSVK YTRGSFLCPG GQPFPHRSFS EEVSVLDGHF TQLGLNSVAY LMGNDDETKK WHVYAASAQD SSNCNNNVYT LEMCMTGLDR EKAAVFYKDE
201: ADKTGSMTDN SGIRKILPKS EICDFEFEPC GYSMNSIEGD AISTIHVTPE DGFSYASFEA VGYDFNTLDL SQLVTRVLSC FEPKQFSVAV HSSVGANSYK
301: PEITVDLEDY GCRERTFESL GEESGTVMYQ TFEKLGKYCG SPRSTLKCEW SSNNSCSSED EKDEGI

Arabidopsis Description

SAMDC1S-adenosylmethionine decarboxylase proenzyme 1 [Source:UniProtKB/Swiss-Prot;Acc:Q96286]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.