Factsheet for TraesCS6D01G202500.1

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

cytosol 2
mitochondrion 1
cytoskeleton 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytoskeleton, cytosol
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	cytoskeleton
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS6B01G249000.1	Wheat	cytosol	95.62	95.62
TraesCS6A01G219500.1	Wheat	cytosol	94.33	94.33
HORVU6Hr1G056110.1	Barley	cytosol	91.75	91.52
Os02t0611200-01	Rice	cytosol	80.41	78.99
EES05409	Sorghum	plastid	76.8	74.87
Zm00001d051056_P001	Maize	plastid	75.26	73.92
TraesCS2D01G352900.1	Wheat	cytosol	70.62	66.99
GSMUA_Achr9P13400_001	Banana	cytosol	61.34	66.11
GSMUA_Achr5P24230_001	Banana	cytosol, peroxisome, plastid	67.01	65.66
GSMUA_Achr7P19450_001	Banana	cytosol, plastid	62.89	63.71
TraesCS5D01G228900.1	Wheat	cytosol, nucleus, peroxisome	64.18	63.52
GSMUA_Achr3P04790_001	Banana	cytosol	60.82	63.27
AT3G25570.2	Thale cress	cytosol	49.23	54.73
Solyc01g010050.2.1	Tomato	cytosol	51.29	54.67
PGSC0003DMT400019451	Potato	cytosol	50.52	54.44
PGSC0003DMT400041339	Potato	cytosol	50.77	54.27
Solyc05g010420.1.1	Tomato	cytosol	50.0	53.89
Solyc02g089610.1.1	Tomato	cytosol	50.26	53.87
VIT_11s0037g00950.t01	Wine grape	cytosol	53.61	53.75
PGSC0003DMT400026053	Potato	cytosol	50.0	53.59
AT5G15950.2	Thale cress	cytosol	48.71	52.21
CDY57536	Canola	cytosol	48.45	51.65
Bra039176.1-P	Field mustard	cytosol	48.45	51.65
CDY71278	Canola	cytosol	47.94	51.24
AT3G02470.1	Thale cress	cytosol	47.94	50.82
CDX74257	Canola	cytosol	48.2	50.82
Bra008662.1-P	Field mustard	cytosol	47.94	50.54
CDX91992	Canola	cytosol	47.68	50.41
CDY26478	Canola	cytosol	47.16	49.86
CDX69487	Canola	cytosol	47.16	49.73
KRH02991	Soybean	cytosol	45.88	49.72
CDX70666	Canola	cytosol	46.39	49.59
Bra006334.1-P	Field mustard	cytosol	38.4	49.34
CDX78666	Canola	cytosol	38.14	49.01
Bra021458.1-P	Field mustard	nucleus	47.94	43.36
CDY71710	Canola	cytosol, nucleus, plastid	47.94	43.36
Bra001046.1-P	Field mustard	nucleus	47.94	41.89
CDY43235	Canola	cytosol, plastid	48.71	40.82
AT3G17717.1	Thale cress	cytosol	12.63	38.58
Bra021271.1-P	Field mustard	cytosol	28.61	33.95
CDY49835	Canola	cytosol	28.09	33.33
CDY63462	Canola	plastid	7.99	20.13
CDY33352	Canola	plastid	7.73	19.48
CDY06772	Canola	nucleus	7.99	19.02
CDX99815	Canola	cytosol	7.73	16.3
CDY17081	Canola	cytosol	7.73	16.04

Protein Annotations

KEGG:00270+4.1.1.50	KEGG:00330+4.1.1.50	Gene3D:3.30.360.50	Gene3D:3.60.90.10	MapMan:8.2.1	GO:GO:0003674
GO:GO:0003824	GO:GO:0004014	GO:GO:0006597	GO:GO:0008150	GO:GO:0008152	GO:GO:0008295
GO:GO:0009058	GO:GO:0009987	PFAM:PF01536	PIRSF:PIRSF001355	ScanProsite:PS01336	PANTHER:PTHR11570
PANTHER:PTHR11570:SF3	InterPro:S-AdoMet_deCO2ase_CS	InterPro:S-AdoMet_deCO2ase_core	InterPro:S-AdoMet_decarboxylase	SUPFAM:SSF56276	TIGRFAMs:TIGR00535
EnsemblPlantsGene:TraesCS6D01G202500	EnsemblPlants:TraesCS6D01G202500.1	SEG:seg	:	:	:

Description

No Description!

Coordinates

chr6D:+:285869726..285870892

Molecular Weight (calculated)

42186.1 Da

IEP (calculated)

4.669

GRAVY (calculated)

-0.081

Length

388 amino acids

Sequence
(BLAST)

001: MAVSAIGFEG YEKRLEITFS EAPVFTDPNG RGLRALSRAQ IDSVLDLAKC TIVSELSNEK FDSYVLSESS LFVYPYKVVI KTCGTTKLLL AIPRVLELAE
101: ELSLPLAAVK YSRGTFIFPE AQPSPHKNFS AEVAFLNGFF GGLKSGGNAY VIGDPAKPGQ KWHVYYATQQ PEQPVVNLEM CMTGLDKKKA SIFFKTSDDG
201: HTSCAKEMTK LSGISEIIPE MEICDFDFEP CGYSMNAIHG SAFSTIHVTP EDGFSYASYE VMGLDPASMA YGDLVKRVLR SFGPSEFSVA VTIFGGHSLA
301: GTWGERLNVG IYDSTNMVVQ ELPDGGALIY QSFTAVGEDF TGSPRSVLNC NVDGNLVTGC KMDAFLCWED DAAQEKDERG AGKKMKSS

Best Arabidopsis Sequence Match ( AT3G25570.2 )
(BLAST)

001: MAVSATGFEG FEKRLEISFF ETTDFLDPQG KSLRSLTKSQ LDEILTPAEC TIVSSLTNSF VDSYVLSESS LFVYPYKIII KTCGTTKLLL SIPHILRLAD
101: SLCLTVKSVR YTRGSFIFPG AQSYPHRSFS EEVALLDDYF GKLNAGSKAF VMGGSDNNPQ RWHVYSASST EESAVCDKPV YTLEMCMTGL DNIKASVFFK
201: TNSVSASEMT ISSGIRNILP GSEICDFNFE PCGYSMNSIE GDAVSTIHVT PEDGFSYASF ETVGYDLKAL NFKELVDRVL VCFGPEEFSV AVHANLGTEV
301: LASDCVADVN GYFSQERELE ELGLGGSVLY QRFVKTVECC SPKSTLGFC

Arabidopsis Description

SAMDC3S-adenosylmethionine decarboxylase proenzyme 3 [Source:UniProtKB/Swiss-Prot;Acc:Q9LSU6]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.