CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

nucleus 1
mitochondrion 6
cytosol 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDX67647	Canola	mitochondrion	97.35	97.35
CDY67121	Canola	mitochondrion	86.09	85.53
AT3G56420.2	Thale cress	mitochondrion	86.09	84.42
CDY70695	Canola	cytosol	76.82	84.06
CDX72138	Canola	mitochondrion	80.13	81.21
CDY27215	Canola	mitochondrion	78.81	79.87
Os01t0168200-01	Rice	plasma membrane	40.4	46.56
Zm00001d037499_P001	Maize	cytosol	40.4	45.86
GSMUA_Achr5P27870_001	Banana	cytosol	42.38	45.39
PGSC0003DMT400059108	Potato	cytosol	41.72	45.32
Solyc03g095500.2.1	Tomato	cytosol	41.72	45.32
TraesCS1A01G112400.1	Wheat	cytosol	39.07	45.04
TraesCS1B01G132600.1	Wheat	cytosol	39.07	45.04
TraesCS1D01G114000.1	Wheat	cytosol	39.07	45.04
EES19112	Sorghum	cytosol	39.74	44.78
CDX73940	Canola	cytosol	40.4	43.57
Os05t0169000-01	Rice	cytosol	37.75	43.18
CDY35999	Canola	cytosol	39.74	42.86
KXG31771	Sorghum	cytosol	42.38	42.67
Zm00001d039710_P004	Maize	cytosol	39.74	41.67
CDY58647	Canola	cytosol	38.41	41.43
GSMUA_Achr8P01700_001	Banana	cytosol	37.75	41.01
HORVU1Hr1G024700.4	Barley	cytosol	39.07	40.41
CDY22165	Canola	cytosol	38.41	39.73
CDY29406	Canola	cytosol	29.8	37.82
CDY28996	Canola	cytosol	28.48	37.72
CDX90669	Canola	cytosol	28.48	37.72
CDX77974	Canola	cytosol	28.48	37.72
CDY39355	Canola	cytosol	29.14	36.97
GSMUA_AchrUn_...	Banana	cytosol, plasma membrane, plastid	39.74	36.36
CDY53958	Canola	cytosol	27.81	35.9
CDY36029	Canola	cytosol	27.15	34.75
CDY65333	Canola	cytosol	29.14	33.08
CDY34470	Canola	cytosol	12.58	32.76
CDY34646	Canola	cytosol	27.15	32.54
CDY32970	Canola	cytosol	26.49	32.52
CDY43592	Canola	cytosol	26.49	32.52
CDX67442	Canola	cytosol	28.48	32.09
CDY27290	Canola	cytosol	25.17	29.69
CDY45144	Canola	cytosol	24.5	28.91
CDY30901	Canola	cytosol	24.5	28.91
CDY27984	Canola	nucleus	39.74	28.44
CDY23544	Canola	cytosol	26.49	27.03
CDY48388	Canola	cytosol	25.17	25.85
CDY11645	Canola	cytosol, plastid	25.83	25.83
CDY38768	Canola	cytosol, plastid	25.83	25.83
CDY23543	Canola	cytosol	23.84	25.71
CDY48387	Canola	cytosol	23.84	25.53
CDY57101	Canola	cytosol	27.15	24.85
CDY03743	Canola	extracellular	13.24	23.26
CDY37032	Canola	cytosol	27.81	22.46
CDY04457	Canola	cytosol	13.24	20.41
CDY69984	Canola	plastid	24.5	19.89
CDY38116	Canola	plastid	23.84	19.25
CDX73752	Canola	cytosol, mitochondrion	27.81	19.09
CDY53739	Canola	plastid	21.85	18.23
CDY28704	Canola	plastid	21.19	17.78
CDY51539	Canola	plastid	21.19	17.78
CDY00656	Canola	cytosol	39.74	16.09
CDY11641	Canola	plastid	14.57	10.63

Protein Annotations

MapMan:10.6.1	Gene3D:3.40.30.10	GO:A0A078H036	UniProt:A0A078H036	EnsemblPlants:CDY32015	ProteinID:CDY32015
ProteinID:CDY32015.1	GO:GO:0003674	GO:GO:0003824	GO:GO:0005575	GO:GO:0005623	GO:GO:0006662
GO:GO:0008150	GO:GO:0008152	GO:GO:0009987	GO:GO:0015035	GO:GO:0019725	GO:GO:0045454
GO:GO:0055114	EnsemblPlantsGene:GSBRNA2T00050852001	InterPro:IPR013766	PFAM:PF00085	PIRSF:PIRSF000077	PRINTS:PR00421
ScanProsite:PS00194	PFscan:PS51352	PANTHER:PTHR10438	PANTHER:PTHR10438:SF267	SUPFAM:SSF52833	InterPro:Thioredoxin
InterPro:Thioredoxin-like_sf	InterPro:Thioredoxin_CS	InterPro:Thioredoxin_domain	UniParc:UPI0004EE898D	SEG:seg	:

Description

BnaC06g15930DBnaC06g15930D protein [Source:UniProtKB/TrEMBL;Acc:A0A078H036]

Coordinates

chrLK032284:-:251059..252416

Molecular Weight (calculated)

17047.7 Da

IEP (calculated)

8.399

GRAVY (calculated)

-0.365

Length

151 amino acids

Sequence
(BLAST)

001: MGNRCARTPC CRKLWSCICC RSNKDEAQAR SQHGPKGKVH PVTKIEKWEE KITEANNNGM ILVVYFSAPW CVPCKNIEPV FKKLASRYPS MIFVTIDVEE
101: LAEFSDEWNV EATPTIVFLK DGRQMDKLVG AETSELQKKT AAAADLLLKK P

Best Arabidopsis Sequence Match ( AT3G56420.1 )
(BLAST)

001: MGNRCARTSC CRKLWSCICC CSNNNNNSYG QTRSQHGSKG KVHPVSRIEK WEEKITEANN HGKILVVNFS APWCVPCKKI EPVFRDLASR YPSMIFVTVD
101: VEELAEFSNE WNVEATPTVV FLKDGRQMDK LVGAETSELQ KKTAAAADLF LRKP

Arabidopsis Description

Putative thioredoxin H10 [Source:UniProtKB/Swiss-Prot;Acc:Q9LXZ8]
SUBAcon: [mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.