Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- cytosol 4
- plastid 1
- mitochondrion 1
- nucleus 1
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
Inferred distinct locusB in Crop
| locusB | locations |
|---|---|
| Os02t0611200-01 | |
| Os04t0498600-01 | |
| Os09t0424300-03 |
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT3G08710.1 | Os02t0611200-01 | AT3G02470.1 | 21798944 |
| AT3G08710.1 | Os04t0498600-01 | AT3G02470.1 | 21798944 |
| AT3G08710.1 | Os09t0424300-03 | AT3G02470.1 | 21798944 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS1D01G114000.1 | Wheat | cytosol | 90.15 | 90.84 |
| TraesCS1B01G132600.1 | Wheat | cytosol | 90.15 | 90.84 |
| TraesCS1A01G112400.1 | Wheat | cytosol | 90.15 | 90.84 |
| Os01t0168200-01 | Rice | plasma membrane | 82.58 | 83.21 |
| Zm00001d037499_P001 | Maize | cytosol | 83.33 | 82.71 |
| HORVU1Hr1G024700.4 | Barley | cytosol | 86.36 | 78.08 |
| EES19112 | Sorghum | cytosol | 76.52 | 75.37 |
| GSMUA_Achr5P27870_001 | Banana | cytosol | 71.21 | 66.67 |
| GSMUA_Achr8P01700_001 | Banana | cytosol | 62.88 | 59.71 |
| CDX73940 | Canola | cytosol | 62.12 | 58.57 |
| CDY58647 | Canola | cytosol | 62.12 | 58.57 |
| CDY35999 | Canola | cytosol | 62.12 | 58.57 |
| VIT_08s0040g00020.t01 | Wine grape | cytosol | 61.36 | 58.27 |
| AT3G08710.1 | Thale cress | cytosol | 61.36 | 57.86 |
| KRH09556 | Soybean | cytosol | 59.85 | 57.66 |
| KRH00477 | Soybean | cytosol | 60.61 | 57.55 |
| Bra040055.1-P | Field mustard | cytosol | 58.33 | 56.2 |
| PGSC0003DMT400076843 | Potato | cytosol | 34.85 | 56.1 |
| CDY22165 | Canola | cytosol | 60.61 | 54.79 |
| Solyc09g015820.2.1 | Tomato | plastid | 61.36 | 52.6 |
| GSMUA_AchrUn_... | Banana | cytosol, plasma membrane, plastid | 65.15 | 52.12 |
| KRH64869 | Soybean | cytosol | 58.33 | 50.33 |
| Bra001346.1-P | Field mustard | cytosol | 62.12 | 50.0 |
| KRH40706 | Soybean | mitochondrion | 59.85 | 46.75 |
| PGSC0003DMT400059108 | Potato | cytosol | 47.73 | 45.32 |
| Solyc03g095500.2.1 | Tomato | cytosol | 46.97 | 44.6 |
| Os05t0480200-01 | Rice | cytosol | 43.94 | 42.96 |
| Bra014691.1-P | Field mustard | cytosol, mitochondrion | 40.91 | 40.3 |
| Bra007245.1-P | Field mustard | plastid | 41.67 | 39.29 |
| CDY70695 | Canola | cytosol | 40.91 | 39.13 |
| AT2G40790.1 | Thale cress | cytosol | 45.45 | 38.96 |
| CDY27984 | Canola | nucleus | 62.12 | 38.86 |
| CDX72138 | Canola | mitochondrion | 43.18 | 38.26 |
| CDY27215 | Canola | mitochondrion | 43.18 | 38.26 |
| CDY67121 | Canola | mitochondrion | 43.94 | 38.16 |
| CDX67647 | Canola | mitochondrion | 43.18 | 37.75 |
| CDY32015 | Canola | mitochondrion | 43.18 | 37.75 |
| AT3G56420.2 | Thale cress | mitochondrion | 43.18 | 37.01 |
| Os07t0186000-02 | Rice | extracellular | 34.09 | 36.89 |
| Os03t0800700-01 | Rice | plastid | 34.09 | 33.58 |
| Os04t0629500-01 | Rice | cytosol | 32.58 | 32.33 |
| Os07t0190800-01 | Rice | cytosol | 32.58 | 31.16 |
| Os12t0280050-00 | Rice | cytosol | 25.0 | 26.83 |
| CDY00656 | Canola | cytosol | 62.88 | 22.25 |
| Os01t0913000-01 | Rice | plastid | 28.03 | 19.79 |
Protein Annotations
| MapMan:10.6.1 | Gene3D:3.40.30.10 | EntrezGene:4337927 | EMBL:AF435817 | EMBL:AK060918 | ProteinID:BAF16672.1 |
| ProteinID:BAS92461.1 | ProteinID:EEE62475.1 | GO:GO:0003674 | GO:GO:0003824 | GO:GO:0004791 | GO:GO:0005575 |
| GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005737 | GO:GO:0006662 | GO:GO:0006950 | GO:GO:0008150 |
| GO:GO:0008152 | GO:GO:0009987 | GO:GO:0015035 | GO:GO:0016671 | GO:GO:0019725 | GO:GO:0034599 |
| GO:GO:0045454 | GO:GO:0047134 | GO:GO:0055114 | GO:GO:0098869 | InterPro:IPR013766 | EnsemblPlantsGene:Os05g0169000 |
| EnsemblPlants:Os05t0169000-01 | PFAM:PF00085 | PIRSF:PIRSF000077 | PRINTS:PR00421 | ScanProsite:PS00194 | PFscan:PS51352 |
| PANTHER:PTHR10438 | PANTHER:PTHR10438:SF267 | UniProt:Q0DKF1 | SUPFAM:SSF52833 | InterPro:Thioredoxin | InterPro:Thioredoxin-like_sf |
| InterPro:Thioredoxin_CS | InterPro:Thioredoxin_domain | UniParc:UPI00003584F7 | RefSeq:XP_015640764.1 | : | : |
Description
THIOREDOXIN H-TYPE 8Similar to Thioredoxin-like protein. (Os05t0169000-01);Similar to Thioredoxin h-like protein. (Os05t0169000-02)
Coordinates
chr5:-:4136117..4139260
Molecular Weight (calculated)
14815.7 Da
IEP (calculated)
5.794
GRAVY (calculated)
-0.395
Length
132 amino acids
Sequence
(BLAST)
(BLAST)
001: MGGCVGKGRR HIEEDKLDFK GGNVHVITSK EDWDRKIEEA NKDGKIVVAN FSASWCGPCR VIAPIYAEMS KTYPQLMFLT IDVDDLMDFS SSWDIRATPT
101: FFFIKNEKQV DKLVGANKPE LEKKVQALAD GS
101: FFFIKNEKQV DKLVGANKPE LEKKVQALAD GS
001: MGSCVSKGKG DDDSVHNVEF SGGNVHLITT KESWDDKLAE ADRDGKIVVA NFSATWCGPC KIVAPFFIEL SEKHSSLMFL LVDVDELSDF SSSWDIKATP
101: TFFFLKNGQQ IGKLVGANKP ELQKKVTSII DSVPESPQRP
101: TFFFLKNGQQ IGKLVGANKP ELQKKVTSII DSVPESPQRP
Arabidopsis Description
TRX9Thioredoxin H9 [Source:UniProtKB/Swiss-Prot;Acc:Q9C9Y6]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.