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Field mustard
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Field mustard
Subcellular Localization
min:
: max

 
Winner_takes_all: plastid

Predictor Summary:
  • nucleus 1
  • plastid 5
  • mitochondrion 2
  • cytosol 2
Predictors GFP MS/MS Papers
Winner Takes All:plastid
Any Predictor:cytosol, mitochondrion, nucleus, plastid
BaCelLo:nucleus
EpiLoc:plastid
iPSORT:plastid
MultiLoc:mitochondrion
Plant-mPloc:cytosol
Predotar:plastid
PProwler:mitochondrion
TargetP:plastid
WoLF PSORT:plastid
YLoc:cytosol
PPI
No PPI Data
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
CDX72138 Canola mitochondrion 97.14 91.28
CDY27215 Canola mitochondrion 96.43 90.6
Bra014691.1-P Field mustard cytosol, mitochondrion 72.86 76.12
AT3G56420.2 Thale cress mitochondrion 83.57 75.97
PGSC0003DMT400059108 Potato cytosol 44.29 44.6
Solyc03g095500.2.1 Tomato cytosol 44.29 44.6
Zm00001d037499_P001 Maize cytosol 40.0 42.11
TraesCS1D01G114000.1 Wheat cytosol 39.29 41.98
Os01t0168200-01 Rice plasma membrane 39.29 41.98
TraesCS1A01G112400.1 Wheat cytosol 39.29 41.98
TraesCS1B01G132600.1 Wheat cytosol 39.29 41.98
Os05t0169000-01 Rice cytosol 39.29 41.67
GSMUA_Achr5P27870_001 Banana cytosol 41.43 41.13
EES19112 Sorghum cytosol 39.29 41.04
KXG31771 Sorghum cytosol 42.86 40.0
Zm00001d039710_P004 Maize cytosol 40.0 38.89
GSMUA_Achr8P01700_001 Banana cytosol 38.57 38.85
Bra040055.1-P Field mustard cytosol 37.86 38.69
HORVU1Hr1G024700.4 Barley cytosol 40.0 38.36
Bra025762.1-P Field mustard cytosol 32.14 37.82
Bra012872.1-P Field mustard cytosol 29.29 35.96
Bra036839.1-P Field mustard cytosol 29.29 35.96
Bra001346.1-P Field mustard cytosol 41.43 35.37
Bra031769.1-P Field mustard cytosol 31.43 34.92
GSMUA_AchrUn_... Banana cytosol, plasma membrane, plastid 40.71 34.55
Bra027469.1-P Field mustard cytosol 30.0 34.15
Bra036335.1-P Field mustard cytosol 27.14 32.48
Bra028445.1-P Field mustard cytosol 30.0 31.58
Bra014037.1-P Field mustard cytosol 26.43 31.36
Bra040318.1-P Field mustard cytosol 28.57 30.77
Bra027837.1-P Field mustard cytosol 26.43 28.91
Bra017898.1-P Field mustard cytosol 26.43 28.91
Bra003977.1-P Field mustard cytosol 29.29 27.52
Bra003976.1-P Field mustard cytosol 25.71 25.53
Bra016258.1-P Field mustard cytosol 27.14 25.17
Bra023564.1-P Field mustard plastid 23.57 17.65
Bra021417.1-P Field mustard plastid 20.0 15.38
Bra040596.1-P Field mustard plastid 19.29 14.92
Protein Annotations
MapMan:10.6.1Gene3D:3.40.30.10EnsemblPlantsGene:Bra007245EnsemblPlants:Bra007245.1EnsemblPlants:Bra007245.1-PGO:GO:0003674
GO:GO:0003824GO:GO:0005575GO:GO:0005623GO:GO:0006662GO:GO:0008150GO:GO:0008152
GO:GO:0009987GO:GO:0015035GO:GO:0019725GO:GO:0045454GO:GO:0055114InterPro:IPR013766
UniProt:M4CSQ3PFAM:PF00085PIRSF:PIRSF000077PRINTS:PR00421PFscan:PS51352PANTHER:PTHR10438
PANTHER:PTHR10438:SF267SUPFAM:SSF52833InterPro:ThioredoxinInterPro:Thioredoxin-like_sfInterPro:Thioredoxin_domainUniParc:UPI0002542B8A
SEG:seg:::::
Description
AT3G56420 (E=8e-060) | INVOLVED IN: cell redox homeostasis; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: Thioredoxin fold (InterPro:IPR012335), Thioredoxin, core (InterPro:IPR015467), Thioredoxin domain (InterPro:IPR013766), Thioredoxin, conserved site (InterPro:IPR017937), Thioredoxin-like subdomain (InterPro:IPR006662), Thioredoxin-like (InterPro:IPR017936), Thioredoxin-like fold (InterPro:IPR012336); BEST Arabidopsis thaliana protein match is: ATCXXS2 (C-TERMINAL CYSTEINE RESIDUE IS CHANGED TO A SERINE 1); protein disulfide isomerase (TAIR:AT2G40790.1); Has 6839 Blast hits to 6830 proteins in 1457 species: Archae - 125; Bacteria - 3259; Metazoa - 916; Fungi - 420; Plants - 647; Viruses - 6; Other Eukaryotes - 1466 (source: NCBI BLink).
Coordinates
chrA09:-:28185885..28186468
Molecular Weight (calculated)
15778.0 Da
IEP (calculated)
7.018
GRAVY (calculated)
-0.198
Length
140 amino acids
Sequence
(BLAST)
001: MCLQLWSRIC CCCSNINNTN GQARSKHGSK GMVYPVTRIE IWEEKVTEAK NNGKILVVNF NASWCVPCKK LEPIFRELAS RYPSMIFVTI DVEELAEFSN
101: EWNVEATPTV VFLKDGRQMD KLVGAETSEL QKKTAAAADL
Best Arabidopsis Sequence Match ( AT3G56420.1 )
(BLAST)
001: MGNRCARTSC CRKLWSCICC CSNNNNNSYG QTRSQHGSKG KVHPVSRIEK WEEKITEANN HGKILVVNFS APWCVPCKKI EPVFRDLASR YPSMIFVTVD
101: VEELAEFSNE WNVEATPTVV FLKDGRQMDK LVGAETSELQ KKTAAAADLF LRKP
Arabidopsis Description
Putative thioredoxin H10 [Source:UniProtKB/Swiss-Prot;Acc:Q9LXZ8]
SUBAcon: [mitochondrion]
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.