Factsheet for TraesCS1B01G132600.1

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

cytosol 2
mitochondrion 1
plastid 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, plastid
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	plastid
YLoc:	cytosol

PPI

Inferred distinct locusB in Crop

locusB	locations
TraesCS2A01G355400.1
TraesCS2B01G372900.1
TraesCS2D01G352900.1
TraesCS5A01G221200.1
TraesCS5B01G220000.1
TraesCS5D01G228900.1
TraesCS6A01G219500.1
TraesCS6B01G249000.1
TraesCS6D01G202500.1

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G08710.1	TraesCS2A01G355400.1	AT3G02470.1	21798944
AT3G08710.1	TraesCS2B01G372900.1	AT3G02470.1	21798944
AT3G08710.1	TraesCS2D01G352900.1	AT3G02470.1	21798944
AT3G08710.1	TraesCS5A01G221200.1	AT3G02470.1	21798944
AT3G08710.1	TraesCS5B01G220000.1	AT3G02470.1	21798944
AT3G08710.1	TraesCS5D01G228900.1	AT3G02470.1	21798944
AT3G08710.1	TraesCS6A01G219500.1	AT3G02470.1	21798944
AT3G08710.1	TraesCS6B01G249000.1	AT3G02470.1	21798944
AT3G08710.1	TraesCS6D01G202500.1	AT3G02470.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS1D01G114000.1	Wheat	cytosol	100.0	100.0
TraesCS1A01G112400.1	Wheat	cytosol	100.0	100.0
Os05t0169000-01	Rice	cytosol	90.84	90.15
Zm00001d037499_P001	Maize	cytosol	87.02	85.71
HORVU1Hr1G024700.4	Barley	cytosol	95.42	85.62
EES19112	Sorghum	cytosol	81.68	79.85
GSMUA_Achr5P27870_001	Banana	cytosol	74.81	69.5
CDY35999	Canola	cytosol	65.65	61.43
GSMUA_Achr8P01700_001	Banana	cytosol	64.89	61.15
CDX73940	Canola	cytosol	64.89	60.71
CDY58647	Canola	cytosol	64.89	60.71
AT3G08710.1	Thale cress	cytosol	64.12	60.0
KRH00477	Soybean	cytosol	63.36	59.71
VIT_08s0040g00020.t01	Wine grape	cytosol	62.6	58.99
Bra040055.1-P	Field mustard	cytosol	61.07	58.39
PGSC0003DMT400076843	Potato	cytosol	35.88	57.32
KRH09556	Soybean	cytosol	59.54	56.93
CDY22165	Canola	cytosol	63.36	56.85
Solyc09g015820.2.1	Tomato	plastid	64.12	54.55
GSMUA_AchrUn_...	Banana	cytosol, plasma membrane, plastid	67.18	53.33
Bra001346.1-P	Field mustard	cytosol	64.89	51.83
KRH64869	Soybean	cytosol	59.54	50.98
KRH40706	Soybean	mitochondrion	62.6	48.52
PGSC0003DMT400059108	Potato	cytosol	46.56	43.88
Solyc03g095500.2.1	Tomato	cytosol	45.04	42.45
TraesCS2B01G260500.1	Wheat	extracellular	30.53	42.11
Bra014691.1-P	Field mustard	cytosol, mitochondrion	42.75	41.79
CDY27984	Canola	nucleus	65.65	40.76
CDY70695	Canola	cytosol	42.75	40.58
TraesCS1B01G339000.1	Wheat	cytosol	35.88	39.83
CDY67121	Canola	mitochondrion	45.8	39.47
Bra007245.1-P	Field mustard	plastid	41.98	39.29
CDX67647	Canola	mitochondrion	45.04	39.07
CDY32015	Canola	mitochondrion	45.04	39.07
AT2G40790.1	Thale cress	cytosol	45.8	38.96
TraesCS1B01G338800.1	Wheat	cytosol, golgi, plastid, unclear	37.4	38.58
TraesCS1B01G311300.1	Wheat	cytosol	41.98	38.46
AT3G56420.2	Thale cress	mitochondrion	45.04	38.31
CDY27215	Canola	mitochondrion	43.51	38.26
CDX72138	Canola	mitochondrion	43.51	38.26
TraesCS5B01G452700.1	Wheat	cytosol, golgi, unclear	34.35	34.35
TraesCS2B01G505100.1	Wheat	cytosol	29.01	27.34
CDY00656	Canola	cytosol	65.65	23.06
TraesCS3B01G453600.1	Wheat	plastid	27.48	19.05

Protein Annotations

MapMan:10.6.1	Gene3D:3.40.30.10	GO:GO:0003674	GO:GO:0003824	GO:GO:0006662	GO:GO:0008150
GO:GO:0008152	GO:GO:0009987	GO:GO:0015035	GO:GO:0019725	GO:GO:0045454	InterPro:IPR013766
PFAM:PF00085	PIRSF:PIRSF000077	PRINTS:PR00421	ScanProsite:PS00194	PFscan:PS51352	PANTHER:PTHR10438
PANTHER:PTHR10438:SF267	SUPFAM:SSF52833	InterPro:Thioredoxin	InterPro:Thioredoxin-like_sf	InterPro:Thioredoxin_CS	InterPro:Thioredoxin_domain
EnsemblPlantsGene:TraesCS1B01G132600	EnsemblPlants:TraesCS1B01G132600.1	TIGR:cd02947	:	:	:

Description

No Description!

Coordinates

chr1B:-:167108707..167110566

Molecular Weight (calculated)

14507.4 Da

IEP (calculated)

4.927

GRAVY (calculated)

-0.273

Length

131 amino acids

Sequence
(BLAST)

001: MGGCVGKGRS IVEEKLDFKG GNVHVITTKE DWDQKIEEAN KDGKIVVANF SASWCGPCRV IAPVYAEMSK TYPQLMFLTI DVDDLMDFSS TWDIRATPTF
101: FFLKNGQQID KLVGANKPEL EKKVQALGDG S

Best Arabidopsis Sequence Match ( AT3G08710.2 )
(BLAST)

001: MGSCVSKGKG DDDSVHNVEF SGGNVHLITT KESWDDKLAE ADRDGKIVVA NFSATWCGPC KIVAPFFIEL SEKHSSLMFL LVDVDELSDF SSSWDIKATP
101: TFFFLKNGQQ IGKLVGANKP ELQKKVTSII DSVPESPQRP

Arabidopsis Description

TRX9Thioredoxin H9 [Source:UniProtKB/Swiss-Prot;Acc:Q9C9Y6]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.