Factsheet for PGSC0003DMT400059108

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

cytosol 4
plastid 3
mitochondrion 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc03g095500.2.1	Tomato	cytosol	95.68	95.68
PGSC0003DMT400076843	Potato	cytosol	30.22	51.22
EES19112	Sorghum	cytosol	46.76	48.51
Os05t0169000-01	Rice	cytosol	45.32	47.73
GSMUA_Achr5P27870_001	Banana	cytosol	48.2	47.52
Zm00001d037499_P001	Maize	cytosol	45.32	47.37
GSMUA_Achr8P01700_001	Banana	cytosol	46.76	46.76
TraesCS1D01G114000.1	Wheat	cytosol	43.88	46.56
TraesCS1B01G132600.1	Wheat	cytosol	43.88	46.56
TraesCS1A01G112400.1	Wheat	cytosol	43.88	46.56
Os01t0168200-01	Rice	plasma membrane	43.88	46.56
KXG31771	Sorghum	cytosol	48.2	44.67
Bra007245.1-P	Field mustard	plastid	44.6	44.29
Bra014691.1-P	Field mustard	cytosol, mitochondrion	42.45	44.03
Zm00001d039710_P004	Maize	cytosol	45.32	43.75
CDY70695	Canola	cytosol	43.17	43.48
CDX72138	Canola	mitochondrion	46.04	42.95
CDY27215	Canola	mitochondrion	46.04	42.95
AT2G40790.1	Thale cress	cytosol	47.48	42.86
AT3G56420.2	Thale cress	mitochondrion	47.48	42.86
CDY67121	Canola	mitochondrion	46.04	42.11
CDX67647	Canola	mitochondrion	45.32	41.72
CDY32015	Canola	mitochondrion	45.32	41.72
PGSC0003DMT400009306	Potato	cytosol	35.25	41.53
HORVU1Hr1G024700.4	Barley	cytosol	42.45	40.41
GSMUA_AchrUn_...	Banana	cytosol, plasma membrane, plastid	47.48	40.0
PGSC0003DMT400009623	Potato	cytosol	30.22	34.15
PGSC0003DMT400045460	Potato	cytosol	16.55	33.82
PGSC0003DMT400055905	Potato	cytosol	28.78	32.0
PGSC0003DMT400045450	Potato	cytosol	28.78	29.63
PGSC0003DMT400003564	Potato	plastid	28.06	27.46
PGSC0003DMT400059966	Potato	cytosol, extracellular, plastid	25.9	19.78

Protein Annotations

MapMan:10.6.1	EntrezGene:102589334	Gene3D:3.40.30.10	GO:GO:0003674	GO:GO:0003824	GO:GO:0005575
GO:GO:0005623	GO:GO:0006662	GO:GO:0008150	GO:GO:0008152	GO:GO:0009987	GO:GO:0015035
GO:GO:0019725	GO:GO:0045454	GO:GO:0055114	InterPro:IPR013766	UniProt:M1C3T6	PFAM:PF00085
EnsemblPlantsGene:PGSC0003DMG400022959	PGSC:PGSC0003DMG400022959	EnsemblPlants:PGSC0003DMT400059108	PIRSF:PIRSF000077	PRINTS:PR00421	PFscan:PS51352
PANTHER:PTHR10438	PANTHER:PTHR10438:SF267	SUPFAM:SSF52833	InterPro:Thioredoxin	InterPro:Thioredoxin-like_sf	InterPro:Thioredoxin_domain
UniParc:UPI0002955A35	RefSeq:XP_015160904.1	:	:	:	:

Description

Thioredoxin h [Source:PGSC_GENE;Acc:PGSC0003DMG400022959]

Coordinates

chr3:-:36249637..36253887

Molecular Weight (calculated)

15445.3 Da

IEP (calculated)

4.705

GRAVY (calculated)

-0.325

Length

139 amino acids

Sequence
(BLAST)

001: MGQCWTKVCS QENNDVPPTF DLAGGNICLV TSMDKWEQKM SEANDSGKIA VVNFSASWCN PCRAAAPGYH ELADKYTSMI FLTVDVDELA ELSTSWDIKA
101: TPTFIFFRDG RQVDKLVGVK KQELQQKLMN LAESTRSPG

Best Arabidopsis Sequence Match ( AT3G08710.2 )
(BLAST)

001: MGSCVSKGKG DDDSVHNVEF SGGNVHLITT KESWDDKLAE ADRDGKIVVA NFSATWCGPC KIVAPFFIEL SEKHSSLMFL LVDVDELSDF SSSWDIKATP
101: TFFFLKNGQQ IGKLVGANKP ELQKKVTSII DSVPESPQRP

Arabidopsis Description

TRX9Thioredoxin H9 [Source:UniProtKB/Swiss-Prot;Acc:Q9C9Y6]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.