Factsheet for Zm00001d039710_P004

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

cytosol 2
mitochondrion 2
plastid 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion
MultiLoc:	cytosol
Predotar:	mitochondrion
PProwler:	mitochondrion
WoLF PSORT:	plastid
YLoc:	cytosol

PPI

Inferred distinct locusB in Crop

locusB	locations
Zm00001d003157_P001
Zm00001d020543_P001
Zm00001d025773_P002
Zm00001d051056_P001

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G08710.1	Zm00001d003157_P001	AT3G02470.1	21798944
AT3G08710.1	Zm00001d020543_P001	AT3G02470.1	21798944
AT3G08710.1	Zm00001d025773_P002	AT3G02470.1	21798944
AT3G08710.1	Zm00001d051056_P001	AT3G02470.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KXG31771	Sorghum	cytosol	93.06	89.33
Zm00001d037499_P001	Maize	cytosol	74.31	80.45
Os01t0168200-01	Rice	plasma membrane	72.22	79.39
GSMUA_Achr5P27870_001	Banana	cytosol	65.97	67.38
VIT_08s0040g00020.t01	Wine grape	cytosol	58.33	60.43
GSMUA_Achr8P01700_001	Banana	cytosol	58.33	60.43
PGSC0003DMT400076843	Potato	cytosol	34.03	59.76
CDY58647	Canola	cytosol	55.56	57.14
CDX73940	Canola	cytosol	55.56	57.14
Bra040055.1-P	Field mustard	cytosol	54.17	56.93
KRH00477	Soybean	cytosol	54.86	56.83
AT3G08710.1	Thale cress	cytosol	54.86	56.43
CDY35999	Canola	cytosol	54.86	56.43
KRH09556	Soybean	cytosol	52.78	55.47
Solyc09g015820.2.1	Tomato	plastid	57.64	53.9
CDY22165	Canola	cytosol	53.47	52.74
GSMUA_AchrUn_...	Banana	cytosol, plasma membrane, plastid	57.64	50.3
KRH64869	Soybean	cytosol	52.08	49.02
Bra001346.1-P	Field mustard	cytosol	55.56	48.78
KRH40706	Soybean	mitochondrion	55.56	47.34
PGSC0003DMT400059108	Potato	cytosol	43.75	45.32
Solyc03g095500.2.1	Tomato	cytosol	42.36	43.88
Bra014691.1-P	Field mustard	cytosol, mitochondrion	38.19	41.04
Zm00001d007800_P001	Maize	cytosol	33.33	40.0
Bra007245.1-P	Field mustard	plastid	38.89	40.0
CDY70695	Canola	cytosol	38.19	39.86
CDX67647	Canola	mitochondrion	41.67	39.74
CDY32015	Canola	mitochondrion	41.67	39.74
AT2G40790.1	Thale cress	cytosol	40.97	38.31
AT3G56420.2	Thale cress	mitochondrion	40.97	38.31
CDY67121	Canola	mitochondrion	40.28	38.16
CDX72138	Canola	mitochondrion	38.89	37.58
CDY27215	Canola	mitochondrion	38.89	37.58
CDY27984	Canola	nucleus	54.86	37.44
Zm00001d019034_P001	Maize	cytosol, extracellular, mitochondrion	31.25	36.89
Zm00001d026368_P001	Maize	cytosol, extracellular	30.56	34.11
Zm00001d038652_P003	Maize	cytosol	29.86	33.59
Zm00001d019035_P001	Maize	cytosol	27.78	31.75
Zm00001d034491_P001	Maize	plastid	29.17	31.58
Zm00001d038486_P002	Maize	cytosol	29.86	30.07
CDY00656	Canola	cytosol	56.94	21.98
Zm00001d024835_P001	Maize	plastid	26.39	21.11
Zm00001d010871_P001	Maize	plastid	27.08	19.4

Protein Annotations

MapMan:10.6.1	EntrezGene:100280833	Gene3D:3.40.30.10	UniProt:A0A1D6MKP7	GO:GO:0003674	GO:GO:0003824
GO:GO:0005575	GO:GO:0005623	GO:GO:0006662	GO:GO:0008150	GO:GO:0008152	GO:GO:0009987
GO:GO:0015035	GO:GO:0019725	GO:GO:0045454	GO:GO:0055114	InterPro:IPR013766	ProteinID:ONM29783.1
PFAM:PF00085	PIRSF:PIRSF000077	PRINTS:PR00421	ScanProsite:PS00194	PFscan:PS51352	PANTHER:PTHR10438
PANTHER:PTHR10438:SF267	SUPFAM:SSF52833	InterPro:Thioredoxin	InterPro:Thioredoxin-like_sf	InterPro:Thioredoxin_CS	InterPro:Thioredoxin_domain
UniParc:UPI000220767A	EnsemblPlantsGene:Zm00001d039710	EnsemblPlants:Zm00001d039710_P004	EnsemblPlants:Zm00001d039710_T004	SEG:seg	:

Description

Thioredoxin H-type

Coordinates

chr3:+:12751625..12753828

Molecular Weight (calculated)

15912.0 Da

IEP (calculated)

5.223

GRAVY (calculated)

-0.208

Length

144 amino acids

Sequence
(BLAST)

001: MGLRRLMRCC CCIAKQHADD GDKIDFGGGN VHVVTSKEDW DQRIAEANKD GKTVVANFSA SWCGPCRVIA PVYAEMSQTY PQLMFLTIDV DDLMEFSSSW
101: DIRATPTFFF LKNEQQVDKL VGANKPELEK KVAAVADAAG SKTV

Best Arabidopsis Sequence Match ( AT3G08710.2 )
(BLAST)

001: MGSCVSKGKG DDDSVHNVEF SGGNVHLITT KESWDDKLAE ADRDGKIVVA NFSATWCGPC KIVAPFFIEL SEKHSSLMFL LVDVDELSDF SSSWDIKATP
101: TFFFLKNGQQ IGKLVGANKP ELQKKVTSII DSVPESPQRP

Arabidopsis Description

TRX9Thioredoxin H9 [Source:UniProtKB/Swiss-Prot;Acc:Q9C9Y6]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.