Factsheet for Zm00001d024835_P001

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 8

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plastid
Any Predictor:	plastid
ChloroP:	plastid
iPSORT:	plastid
MultiLoc:	plastid
Predotar:	plastid
PProwler:	plastid
TargetP:	plastid
WoLF PSORT:	plastid
YLoc:	plastid

plastid: 20089766
plastid: 22065420
plastid: 23198870

msms PMID: 20089766 doi

G Friso, W Majeran, M Huang, Q Sun, KJ van Wijk

Department of Plant Biology, Cornell University, Ithaca, New York 14853, USA.

msms PMID: 23198870 doi

M Huang, G Friso, K Nishimura, X Qu, PD Olinares, W Majeran, Q Sun, KJ van Wijk

Department of Plant Biology, Cornell University, Ithaca, New York 14853, United States.

msms PMID: 22065420 doi

W Majeran, G Friso, Y Asakura, X Qu, M Huang, L Ponnala, KP Watkins, A Barkan, KJ van Wijk

Department of Plant Biology, Cornell University, Ithaca, New York 14853, USA.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KXG21303	Sorghum	plastid	86.11	80.73
Zm00001d010871_P001	Maize	plastid	84.44	75.62
Os01t0913000-01	Rice	plastid	76.11	73.26
TraesCS3B01G453600.1	Wheat	plastid	72.78	69.31
TraesCS3A01G418400.1	Wheat	plastid	71.11	67.72
VIT_04s0023g00740.t01	Wine grape	plastid	61.11	63.95
KRH00940	Soybean	nucleus, plastid	61.11	61.45
KRH40285	Soybean	plastid	60.0	59.67
GSMUA_Achr8P01040_001	Banana	plastid	58.33	58.66
Solyc05g056300.2.1	Tomato	plastid	57.22	56.59
PGSC0003DMT400059966	Potato	cytosol, extracellular, plastid	56.11	55.49
AT3G02730.1	Thale cress	plastid	54.44	55.06
AT5G16400.1	Thale cress	plastid	56.11	54.59
Bra021417.1-P	Field mustard	plastid	54.44	53.85
CDY53739	Canola	plastid	53.89	53.59
CDY51539	Canola	plastid	52.22	52.22
CDY69984	Canola	plastid	53.89	52.15
Bra040596.1-P	Field mustard	plastid	51.67	51.38
CDY28704	Canola	plastid	51.11	51.11
Bra023564.1-P	Field mustard	plastid	52.78	50.8
CDY38116	Canola	plastid	52.22	50.27
GSMUA_Achr11P...	Banana	mitochondrion	35.0	39.13
Zm00001d019034_P001	Maize	cytosol, extracellular, mitochondrion	22.78	33.61
Zm00001d038652_P003	Maize	cytosol	23.89	33.59
Zm00001d007800_P001	Maize	cytosol	21.11	31.67
Zm00001d037499_P001	Maize	cytosol	20.56	27.82
Zm00001d019035_P001	Maize	cytosol	19.44	27.78
Zm00001d034491_P001	Maize	plastid	20.0	27.07
Zm00001d039710_P004	Maize	cytosol	21.11	26.39
Zm00001d026368_P001	Maize	cytosol, extracellular	16.67	23.26
Zm00001d038486_P002	Maize	cytosol	15.56	19.58

Protein Annotations

MapMan:10.5.4	Gene3D:3.40.30.10	ProteinID:AQK42157.1	GO:GO:0003674	GO:GO:0003824	GO:GO:0005575
GO:GO:0005623	GO:GO:0006662	GO:GO:0008150	GO:GO:0008152	GO:GO:0009987	GO:GO:0015035
GO:GO:0019725	GO:GO:0045454	GO:GO:0055114	InterPro:IPR013766	UniProt:K7UGI3	PFAM:PF00085
PRINTS:PR00421	ScanProsite:PS00194	PFscan:PS51352	PANTHER:PTHR10438	PANTHER:PTHR10438:SF258	SUPFAM:SSF52833
InterPro:Thioredoxin	InterPro:Thioredoxin-like_sf	InterPro:Thioredoxin_CS	InterPro:Thioredoxin_domain	UniParc:UPI0001B63740	EnsemblPlantsGene:Zm00001d024835
EnsemblPlants:Zm00001d024835_P001	EnsemblPlants:Zm00001d024835_T001	:	:	:	:

Description

Putative thioredoxin superfamily protein

Coordinates

chr10:-:90195370..90197131

Molecular Weight (calculated)

19073.2 Da

IEP (calculated)

7.830

GRAVY (calculated)

0.067

Length

180 amino acids

Sequence
(BLAST)

001: MALRLPISSS HGLASTPAPI STTTCRPAVL ATAAAQKRSL LLATASETRG VAPVRSSGIE TSTVGLGCEA VTGQVTEVNK DTFWPIVEAA GDKVVVLDMY
101: TEWCGPCKVM APKFQEMSEK NLDVVFLKLD CNQDNKPLAK ELGIKVVPTF KILKGGKVVK EVTGAKIDEL AQAIDTVKSD

Best Arabidopsis Sequence Match ( AT5G16400.1 )
(BLAST)

001: MPLSLRLAPS PTSFRYSPIT STGAGGFSPV KQHCRIPNSG VATKIGFCSG GGGVLDSGRR IGSCVVRCSL ETVNVTVGQV TEVDKDTFWP IVKAAGDKIV
101: VLDMYTQWCG PCKVIAPKYK ELSEKYQDMV FLKLDCNQDN KPLAKELGIR VVPTFKILKD NKVVKEVTGA KYEDLLAAIE AARSG

Arabidopsis Description

TRXF2TRXF2 [Source:UniProtKB/TrEMBL;Acc:A0A178UDV9]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.