Factsheet for Os01t0913000-01

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 9
mitochondrion 1

Predictors

GFP

MS/MS

Papers

plastid: 27126603
extracellular: 28232208

msms PMID: 27126603 doi

Y Wang, K Ji, S Shen, H Chen

Key Laboratory of Research and Development for Resource Plant, Institute of Botany, Chinese Academy of Sciences, Beijing 100093, China., Key Laboratory of Research and Development for Resource Plant, Institute of Botany, Chinese Academy of Sciences, Beijing 100093, China. Electronic address: chenh@ibcas.ac.cn., Key Laboratory of Research and Development for Resource Plant, Institute of Botany, Chinese Academy of Sciences, Beijing 100093, China; University of Chinese Academy of Sciences, Beijing 100049, China.

msms PMID: 28232208 doi

Y Wang, R Gupta, W Song, HH Huh, SE Lee, J Wu, GK Agrawal, R Rakwal, KY Kang, SR Park, ST Kim

Department of Plant Bioscience, Life and Industry Convergence Research Institute, Pusan National University, Miryang 627-707, South Korea., Department of Plant Bioscience, Life and Industry Convergence Research Institute, Pusan National University, Miryang 627-707, South Korea. Electronic address: stkim71@pusan.ac.kr., Department of Plant Microbe Interactions, Max Planck Institute for Plant Breeding Research, Carl-von-Linneweg 10, Cologne 50829, Germany., Division of Applied Life Science (BK21 Program), Gyeongsang National University, Jinju, South Korea., National Academy of Agricultural Science, Rural Development Administration, Suwon 441-707, South Korea. Electronic address: srpark@korea.kr., Plant Proteomics Group, Max Planck Institute for Plant Breeding Research, Carl-von-Linneweg 10, Cologne 50829, Germany., Research Laboratory for Biotechnology and Biochemistry (RLABB), GPO 13265, Kathmandu 44600, Nepal; GRADE (Global Research Arch for Developing Education) Academy, Pvt. Ltd, Adarsh Nagar-13, Birgunj 44300, Nepal., Research Laboratory for Biotechnology and Biochemistry (RLABB), GPO 13265, Kathmandu 44600, Nepal; GRADE (Global Research Arch for Developing Education) Academy, Pvt. Ltd, Adarsh Nagar-13, Birgunj 44300, Nepal; Faculty of Health and Sport Sciences, Tsukuba International Academy for Sport Studies (TIAS), University of Tsukuba, 1-1-1 Tennodai, Tsukuba, 305-8574, Ibaraki, Japan.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS3A01G418400.1	Wheat	plastid	78.61	77.78
TraesCS3B01G453600.1	Wheat	plastid	77.01	76.19
Zm00001d024835_P001	Maize	plastid	73.26	76.11
VIT_04s0023g00740.t01	Wine grape	plastid	64.17	69.77
KXG21303	Sorghum	plastid	70.05	68.23
Zm00001d010871_P001	Maize	plastid	69.52	64.68
GSMUA_Achr8P01040_001	Banana	plastid	58.29	60.89
KRH00940	Soybean	nucleus, plastid	56.15	58.66
AT3G02730.1	Thale cress	plastid	54.01	56.74
KRH40285	Soybean	plastid	54.55	56.35
Bra021417.1-P	Field mustard	plastid	54.55	56.04
CDY53739	Canola	plastid	54.01	55.8
AT5G16400.1	Thale cress	plastid	55.08	55.68
Solyc05g056300.2.1	Tomato	plastid	53.48	54.95
PGSC0003DMT400059966	Potato	cytosol, extracellular, plastid	53.48	54.95
CDY51539	Canola	plastid	51.87	53.89
Bra040596.1-P	Field mustard	plastid	51.34	53.04
CDY28704	Canola	plastid	50.8	52.78
CDY69984	Canola	plastid	52.41	52.69
Bra023564.1-P	Field mustard	plastid	50.8	50.8
CDY38116	Canola	plastid	50.8	50.8
GSMUA_Achr11P...	Banana	mitochondrion	35.83	41.61
Os07t0186000-02	Rice	extracellular	21.93	33.61
Os07t0190800-01	Rice	cytosol	21.93	29.71
Os03t0800700-01	Rice	plastid	20.86	29.1
Os01t0168200-01	Rice	plasma membrane	20.32	29.01
Os05t0169000-01	Rice	cytosol	19.79	28.03
Os05t0480200-01	Rice	cytosol	18.72	25.93
Os04t0629500-01	Rice	cytosol	16.58	23.31
Os12t0280050-00	Rice	cytosol	14.97	22.76

Protein Annotations

MapMan:10.5.4	Gene3D:3.40.30.10	EntrezGene:4324320	EMBL:AK101264	ProteinID:BAB90300.1	ProteinID:BAF07081.1
ProteinID:BAS75851.1	ProteinID:EAZ14590.1	GO:GO:0003674	GO:GO:0003824	GO:GO:0004791	GO:GO:0005575
GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0006662	GO:GO:0006950	GO:GO:0008150
GO:GO:0008152	GO:GO:0009507	GO:GO:0009536	GO:GO:0009987	GO:GO:0015035	GO:GO:0016671
GO:GO:0019725	GO:GO:0034599	GO:GO:0045454	GO:GO:0047134	GO:GO:0055114	GO:GO:0098869
InterPro:IPR013766	EnsemblPlantsGene:Os01g0913000	EnsemblPlants:Os01t0913000-01	PFAM:PF00085	PRINTS:PR00421	ScanProsite:PS00194
PFscan:PS51352	PANTHER:PTHR10438	PANTHER:PTHR10438:SF258	UniProt:Q8S091	SUPFAM:SSF52833	InterPro:Thioredoxin
InterPro:Thioredoxin-like_sf	InterPro:Thioredoxin_CS	InterPro:Thioredoxin_domain	UniParc:UPI00000A2E23	RefSeq:XP_015616604.1	SEG:seg

Description

THIOREDOXIN H-TYPE 10Similar to Thioredoxin F-type 2, chloroplast precursor (TRX-F2). (Os01t0913000-01)

Coordinates

chr1:+:39794547..39795809

Molecular Weight (calculated)

19747.9 Da

IEP (calculated)

8.760

GRAVY (calculated)

0.003

Length

187 amino acids

Sequence
(BLAST)

001: MALRLSVSSS HGPASSPAIS TCRPAACGRF PALLGGGVAS QRRSLTVVSG PETRAVIPVR SSGSDTATVG AEAEAVAVTG QVTEVNKDTF WPIVKSAGPK
101: VVVLDMYTQW CGPCKVMAPK FQEMSEKDQD VVFLKLDCNQ DNKSLAKELG IKVVPTFKIL KDGKVVKEVT GAKLDELIQA IETVKSS

Best Arabidopsis Sequence Match ( AT5G16400.1 )
(BLAST)

001: MPLSLRLAPS PTSFRYSPIT STGAGGFSPV KQHCRIPNSG VATKIGFCSG GGGVLDSGRR IGSCVVRCSL ETVNVTVGQV TEVDKDTFWP IVKAAGDKIV
101: VLDMYTQWCG PCKVIAPKYK ELSEKYQDMV FLKLDCNQDN KPLAKELGIR VVPTFKILKD NKVVKEVTGA KYEDLLAAIE AARSG

Arabidopsis Description

TRXF2TRXF2 [Source:UniProtKB/TrEMBL;Acc:A0A178UDV9]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.