CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 8
mitochondrion 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY69984	Canola	plastid	95.19	95.7
AT5G16400.1	Thale cress	plastid	80.21	81.08
CDY53739	Canola	plastid	70.59	72.93
CDY51539	Canola	plastid	67.38	70.0
CDY28704	Canola	plastid	66.31	68.89
KRH00940	Soybean	nucleus, plastid	56.15	58.66
KRH40285	Soybean	plastid	56.15	58.01
VIT_04s0023g00740.t01	Wine grape	plastid	52.41	56.98
GSMUA_Achr8P01040_001	Banana	plastid	51.34	53.63
Zm00001d024835_P001	Maize	plastid	50.27	52.22
Os01t0913000-01	Rice	plastid	50.8	50.8
TraesCS3B01G453600.1	Wheat	plastid	51.34	50.79
PGSC0003DMT400059966	Potato	cytosol, extracellular, plastid	49.2	50.55
Solyc05g056300.2.1	Tomato	plastid	49.2	50.55
TraesCS3A01G418400.1	Wheat	plastid	50.8	50.26
KXG21303	Sorghum	plastid	49.2	47.92
Zm00001d010871_P001	Maize	plastid	49.73	46.27
GSMUA_Achr11P...	Banana	mitochondrion	37.97	44.1
CDX77974	Canola	cytosol	22.46	36.84
CDX90669	Canola	cytosol	21.93	35.96
CDY28996	Canola	cytosol	21.39	35.09
CDY39355	Canola	cytosol	21.93	34.45
CDY29406	Canola	cytosol	21.93	34.45
CDY30901	Canola	cytosol	23.53	34.38
CDY45144	Canola	cytosol	23.53	34.38
CDY43592	Canola	cytosol	21.93	33.33
CDY27290	Canola	cytosol	22.46	32.81
CDY32970	Canola	cytosol	20.86	31.71
CDY34470	Canola	cytosol	9.63	31.03
CDX67442	Canola	cytosol	21.93	30.6
CDY65333	Canola	cytosol	21.39	30.08
CDY35999	Canola	cytosol	22.46	30.0
CDX73940	Canola	cytosol	22.46	30.0
CDY58647	Canola	cytosol	21.93	29.29
CDY53958	Canola	cytosol	18.18	29.06
CDY36029	Canola	cytosol	18.18	28.81
CDY22165	Canola	cytosol	22.46	28.77
CDY03743	Canola	extracellular	12.83	27.91
CDY11645	Canola	cytosol, plastid	21.93	27.15
CDY38768	Canola	cytosol, plastid	21.93	27.15
CDY23544	Canola	cytosol	21.39	27.03
CDY34646	Canola	cytosol	18.18	26.98
CDY48388	Canola	cytosol	20.86	26.53
CDY23543	Canola	cytosol	19.25	25.71
CDY48387	Canola	cytosol	19.25	25.53
CDY04457	Canola	cytosol	12.83	24.49
CDY27215	Canola	mitochondrion	19.25	24.16
CDX72138	Canola	mitochondrion	19.25	24.16
CDY32015	Canola	mitochondrion	19.25	23.84
CDX67647	Canola	mitochondrion	19.25	23.84
CDY67121	Canola	mitochondrion	19.25	23.68
CDY70695	Canola	cytosol	17.11	23.19
CDY57101	Canola	cytosol	18.72	21.21
CDY27984	Canola	nucleus	22.46	19.91
CDY37032	Canola	cytosol	19.79	19.79
CDX73752	Canola	cytosol, mitochondrion	22.46	19.09
CDY11641	Canola	plastid	12.83	11.59
CDY00656	Canola	cytosol	22.99	11.53

Protein Annotations

MapMan:10.5.4	Gene3D:3.40.30.10	GO:A0A078HKG5	UniProt:A0A078HKG5	EnsemblPlants:CDY38116	ProteinID:CDY38116
ProteinID:CDY38116.1	GO:GO:0003674	GO:GO:0003824	GO:GO:0005575	GO:GO:0005623	GO:GO:0006662
GO:GO:0008150	GO:GO:0008152	GO:GO:0009987	GO:GO:0015035	GO:GO:0019725	GO:GO:0045454
GO:GO:0055114	EnsemblPlantsGene:GSBRNA2T00065394001	InterPro:IPR013766	PFAM:PF00085	PRINTS:PR00421	ScanProsite:PS00194
PFscan:PS51352	PANTHER:PTHR10438	PANTHER:PTHR10438:SF258	SUPFAM:SSF52833	InterPro:Thioredoxin	InterPro:Thioredoxin-like_sf
InterPro:Thioredoxin_CS	InterPro:Thioredoxin_domain	UniParc:UPI0004EEF46A	:	:	:

Description

BnaC02g06570DBnaC02g06570D protein [Source:UniProtKB/TrEMBL;Acc:A0A078HKG5]

Coordinates

chrLK032416:+:203796..205156

Molecular Weight (calculated)

20125.6 Da

IEP (calculated)

9.088

GRAVY (calculated)

-0.080

Length

187 amino acids

Sequence
(BLAST)

001: MTLSLRIAPP PVSLRYSPAP STPSGGGLRP AKQRCRIPNS GVAAKTGSCS GVGGVLDLRK RIGGSCVARC SLETVNVSVG EVTEVDKDTF WPVVKAAGDK
101: LVVLDMYTQW CGPCKVMAPK YKELSEKYQD MVFLKLDCNE ENKPVAQELG IRVVPTFKIL KDNKVIKEVV GAKFDELLAA IEAARSG

Best Arabidopsis Sequence Match ( AT5G16400.1 )
(BLAST)

001: MPLSLRLAPS PTSFRYSPIT STGAGGFSPV KQHCRIPNSG VATKIGFCSG GGGVLDSGRR IGSCVVRCSL ETVNVTVGQV TEVDKDTFWP IVKAAGDKIV
101: VLDMYTQWCG PCKVIAPKYK ELSEKYQDMV FLKLDCNQDN KPLAKELGIR VVPTFKILKD NKVVKEVTGA KYEDLLAAIE AARSG

Arabidopsis Description

TRXF2TRXF2 [Source:UniProtKB/TrEMBL;Acc:A0A178UDV9]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.