CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 6
cytosol 1
mitochondrion 2

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY51539	Canola	plastid	96.67	96.67
Bra040596.1-P	Field mustard	plastid	95.0	94.48
CDY53739	Canola	plastid	86.67	86.19
AT3G02730.1	Thale cress	plastid	83.33	84.27
CDY38116	Canola	plastid	68.89	66.31
CDY69984	Canola	plastid	67.78	65.59
VIT_04s0023g00740.t01	Wine grape	plastid	55.0	57.56
KRH00940	Soybean	nucleus, plastid	56.67	56.98
KRH40285	Soybean	plastid	57.22	56.91
GSMUA_Achr8P01040_001	Banana	plastid	53.33	53.63
Solyc05g056300.2.1	Tomato	plastid	53.89	53.3
PGSC0003DMT400059966	Potato	cytosol, extracellular, plastid	53.33	52.75
TraesCS3B01G453600.1	Wheat	plastid	53.89	51.32
TraesCS3A01G418400.1	Wheat	plastid	53.89	51.32
Zm00001d024835_P001	Maize	plastid	51.11	51.11
Os01t0913000-01	Rice	plastid	52.78	50.8
KXG21303	Sorghum	plastid	50.0	46.88
Zm00001d010871_P001	Maize	plastid	52.22	46.77
GSMUA_Achr11P...	Banana	mitochondrion	33.89	37.89
CDX77974	Canola	cytosol	20.56	32.46
CDY28996	Canola	cytosol	20.0	31.58
CDX90669	Canola	cytosol	20.0	31.58
CDY39355	Canola	cytosol	20.56	31.09
CDY29406	Canola	cytosol	20.56	31.09
CDY34470	Canola	cytosol	10.0	31.03
CDY45144	Canola	cytosol	20.56	28.91
CDY30901	Canola	cytosol	20.56	28.91
CDY36029	Canola	cytosol	18.33	27.97
CDY32970	Canola	cytosol	18.89	27.64
CDY43592	Canola	cytosol	18.89	27.64
CDY53958	Canola	cytosol	17.78	27.35
CDY27290	Canola	cytosol	19.44	27.34
CDX67442	Canola	cytosol	19.44	26.12
CDY65333	Canola	cytosol	18.89	25.56
CDY11645	Canola	cytosol, plastid	21.11	25.17
CDY38768	Canola	cytosol, plastid	21.11	25.17
CDY23543	Canola	cytosol	18.89	24.29
CDY48387	Canola	cytosol	18.89	24.11
CDY23544	Canola	cytosol	19.44	23.65
CDX73940	Canola	cytosol	18.33	23.57
CDY35999	Canola	cytosol	18.33	23.57
CDY22165	Canola	cytosol	18.89	23.29
CDY48388	Canola	cytosol	18.89	23.13
CDY58647	Canola	cytosol	17.78	22.86
CDY32015	Canola	mitochondrion	17.78	21.19
CDX67647	Canola	mitochondrion	17.78	21.19
CDY03743	Canola	extracellular	10.0	20.93
CDY34646	Canola	cytosol	14.44	20.63
CDY67121	Canola	mitochondrion	17.22	20.39
CDY70695	Canola	cytosol	15.0	19.57
CDX72138	Canola	mitochondrion	16.11	19.46
CDY27215	Canola	mitochondrion	16.11	19.46
CDY57101	Canola	cytosol	17.22	18.79
CDY04457	Canola	cytosol	10.0	18.37
CDY37032	Canola	cytosol	18.89	18.18
CDX73752	Canola	cytosol, mitochondrion	20.56	16.82
CDY27984	Canola	nucleus	18.33	15.64
CDY11641	Canola	plastid	11.11	9.66
CDY00656	Canola	cytosol	18.89	9.12

Protein Annotations

MapMan:10.5.4	Gene3D:3.40.30.10	GO:A0A078GU43	UniProt:A0A078GU43	EnsemblPlants:CDY28704	ProteinID:CDY28704
ProteinID:CDY28704.1	GO:GO:0003674	GO:GO:0003824	GO:GO:0005575	GO:GO:0005623	GO:GO:0006662
GO:GO:0008150	GO:GO:0008152	GO:GO:0009987	GO:GO:0015035	GO:GO:0019725	GO:GO:0045454
GO:GO:0055114	EnsemblPlantsGene:GSBRNA2T00041341001	InterPro:IPR013766	PFAM:PF00085	PRINTS:PR00421	ScanProsite:PS00194
PFscan:PS51352	PANTHER:PTHR10438	PANTHER:PTHR10438:SF258	SUPFAM:SSF52833	InterPro:Thioredoxin	InterPro:Thioredoxin-like_sf
InterPro:Thioredoxin_CS	InterPro:Thioredoxin_domain	UniParc:UPI0004EEDC44	:	:	:

Description

BnaCnng05900DBnaCnng05900D protein [Source:UniProtKB/TrEMBL;Acc:A0A078GU43]

Coordinates

chrLK032225:-:303180..304273

Molecular Weight (calculated)

19785.1 Da

IEP (calculated)

9.339

GRAVY (calculated)

-0.110

Length

180 amino acids

Sequence
(BLAST)

001: MPLSLRLAPY PTALASTTGG YGPVKKQCRI PYSGVATTRI GFFSLDYGKR VESSVVRCSL ETVNVNVGQV KEVDKDTFWP IVKAAGEKII VLDMYTQWCG
101: PCKVIAPKYK ALSEKYEDVV FLKLDCNPEN RPLVKELGLR VVPTFKIFKD NKVVKEVTGA KYDNLVEAIE TARSAGGSSG

Best Arabidopsis Sequence Match ( AT3G02730.1 )
(BLAST)

001: MPLSLRLSPS PTALSPTTGG FGPSRKQCRI PYSGVPTTKI GFCSLDSRKR GDSSVVRCSL ETVNVSVGQV TEVDKDTFWP IVKAAGEKLV VLDMYTQWCG
101: PCKVIAPKYK ALSEKYDDVV FLKLDCNPDN RPLAKELGIR VVPTFKILKD NKVVKEVTGA KYDDLVAAIE TARSAASG

Arabidopsis Description

TRXF1TRXF1 [Source:UniProtKB/TrEMBL;Acc:A0A178VBJ7]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.