CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

plastid 2
mitochondrion 4
cytosol 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY27215	Canola	mitochondrion	97.99	97.99
Bra007245.1-P	Field mustard	plastid	91.28	97.14
AT3G56420.2	Thale cress	mitochondrion	84.56	81.82
CDY67121	Canola	mitochondrion	82.55	80.92
CDX67647	Canola	mitochondrion	81.21	80.13
CDY32015	Canola	mitochondrion	81.21	80.13
CDY70695	Canola	cytosol	73.83	79.71
PGSC0003DMT400059108	Potato	cytosol	42.95	46.04
Solyc03g095500.2.1	Tomato	cytosol	42.95	46.04
Os01t0168200-01	Rice	plasma membrane	38.93	44.27
Zm00001d037499_P001	Maize	cytosol	38.93	43.61
CDX73940	Canola	cytosol	40.94	43.57
TraesCS1A01G112400.1	Wheat	cytosol	38.26	43.51
TraesCS1B01G132600.1	Wheat	cytosol	38.26	43.51
TraesCS1D01G114000.1	Wheat	cytosol	38.26	43.51
Os05t0169000-01	Rice	cytosol	38.26	43.18
CDY35999	Canola	cytosol	40.27	42.86
GSMUA_Achr5P27870_001	Banana	cytosol	40.27	42.55
EES19112	Sorghum	cytosol	38.26	42.54
CDY58647	Canola	cytosol	38.93	41.43
CDY22165	Canola	cytosol	39.6	40.41
GSMUA_Achr8P01700_001	Banana	cytosol	37.58	40.29
KXG31771	Sorghum	cytosol	40.27	40.0
HORVU1Hr1G024700.4	Barley	cytosol	38.26	39.04
Zm00001d039710_P004	Maize	cytosol	37.58	38.89
CDY29406	Canola	cytosol	30.87	38.66
CDY39355	Canola	cytosol	30.2	37.82
CDX77974	Canola	cytosol	28.19	36.84
CDX90669	Canola	cytosol	28.19	36.84
CDY28996	Canola	cytosol	28.19	36.84
GSMUA_AchrUn_...	Banana	cytosol, plasma membrane, plastid	38.93	35.15
CDY32970	Canola	cytosol	28.86	34.96
CDY43592	Canola	cytosol	28.86	34.96
CDY34646	Canola	cytosol	29.53	34.92
CDY53958	Canola	cytosol	26.85	34.19
CDY65333	Canola	cytosol	30.2	33.83
CDX67442	Canola	cytosol	29.53	32.84
CDY36029	Canola	cytosol	25.5	32.2
CDY27290	Canola	cytosol	26.85	31.25
CDY34470	Canola	cytosol	12.08	31.03
CDY30901	Canola	cytosol	26.17	30.47
CDY45144	Canola	cytosol	26.17	30.47
CDY48388	Canola	cytosol	28.19	28.57
CDY27984	Canola	nucleus	40.27	28.44
CDY23544	Canola	cytosol	28.19	28.38
CDY11645	Canola	cytosol, plastid	28.19	27.81
CDY38768	Canola	cytosol, plastid	28.19	27.81
CDY23543	Canola	cytosol	24.83	26.43
CDY48387	Canola	cytosol	24.83	26.24
CDY57101	Canola	cytosol	28.86	26.06
CDY03743	Canola	extracellular	13.42	23.26
CDY37032	Canola	cytosol	28.86	22.99
CDY04457	Canola	cytosol	13.42	20.41
CDY38116	Canola	plastid	24.16	19.25
CDY69984	Canola	plastid	23.49	18.82
CDX73752	Canola	cytosol, mitochondrion	27.52	18.64
CDY53739	Canola	plastid	20.13	16.57
CDY28704	Canola	plastid	19.46	16.11
CDY51539	Canola	plastid	19.46	16.11
CDY00656	Canola	cytosol	40.27	16.09
CDY11641	Canola	plastid	15.44	11.11

Protein Annotations

MapMan:10.6.1	Gene3D:3.40.30.10	GO:A0A078CAW4	EnsemblPlants:CDX72138	ProteinID:CDX72138	ProteinID:CDX72138.1
GO:GO:0003674	GO:GO:0003824	GO:GO:0005575	GO:GO:0005623	GO:GO:0006662	GO:GO:0008150
GO:GO:0008152	GO:GO:0009987	GO:GO:0015035	GO:GO:0019725	GO:GO:0045454	EnsemblPlantsGene:GSBRNA2T00155957001
InterPro:IPR013766	PFAM:PF00085	PIRSF:PIRSF000077	PRINTS:PR00421	PFscan:PS51352	PANTHER:PTHR10438
PANTHER:PTHR10438:SF267	SUPFAM:SSF52833	InterPro:Thioredoxin	InterPro:Thioredoxin-like_sf	InterPro:Thioredoxin_domain	UniParc:UPI0004EB25E4
SEG:seg	:	:	:	:	:

Description

BnaC08g27360D

Coordinates

chrLK031795:+:2614040..2614747

Molecular Weight (calculated)

16778.2 Da

IEP (calculated)

8.400

GRAVY (calculated)

-0.321

Length

149 amino acids

Sequence
(BLAST)

001: MGNRCARTPS CRKLWSRICC CCSNINNTNG QARSKHGSKG MVYPVTRIEI WEEKVTEAKN NGKILVVNFN ASWCVPCKKL EPIFRELASR YPSMIFVTID
101: VEELAEFSNE WNVEATPTIV FLKDGRQMDK LVGAETSELQ KKTAAAADL

Best Arabidopsis Sequence Match ( AT3G56420.1 )
(BLAST)

001: MGNRCARTSC CRKLWSCICC CSNNNNNSYG QTRSQHGSKG KVHPVSRIEK WEEKITEANN HGKILVVNFS APWCVPCKKI EPVFRDLASR YPSMIFVTVD
101: VEELAEFSNE WNVEATPTVV FLKDGRQMDK LVGAETSELQ KKTAAAADLF LRKP

Arabidopsis Description

Putative thioredoxin H10 [Source:UniProtKB/Swiss-Prot;Acc:Q9LXZ8]
SUBAcon: [mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.