CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 1
plastid 1
cytosol 4
mitochondrion 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Bra025762.1-P	Field mustard	cytosol	100.0	100.0
CDY39355	Canola	cytosol	97.48	97.48
AT1G19730.1	Thale cress	cytosol	85.71	85.71
CDY53958	Canola	cytosol	64.71	65.81
CDY36029	Canola	cytosol	62.18	62.71
CDY28996	Canola	cytosol	57.14	59.65
CDX90669	Canola	cytosol	57.14	59.65
CDX77974	Canola	cytosol	57.14	59.65
CDY43592	Canola	cytosol	61.34	59.35
CDY32970	Canola	cytosol	60.5	58.54
HORVU1Hr1G075560.1	Barley	cytosol	57.14	55.74
CDY34470	Canola	cytosol	26.89	55.17
TraesCS1D01G327500.1	Wheat	cytosol, plastid	53.78	53.78
TraesCS1B01G339000.1	Wheat	cytosol	52.1	52.54
TraesCS1B01G338800.1	Wheat	cytosol, golgi, plastid, unclear	55.46	51.97
TraesCS1A01G325600.1	Wheat	cytosol	56.3	51.54
OQU78269	Sorghum	cytosol	52.94	50.0
Zm00001d038652_P003	Maize	cytosol	51.26	47.66
TraesCS7A01G562100.1	Wheat	cytosol	40.34	45.28
TraesCS7D01G001000.1	Wheat	cytosol	41.18	43.36
CDY65333	Canola	cytosol	43.7	39.1
CDX67442	Canola	cytosol	42.86	38.06
CDY27290	Canola	cytosol	37.82	35.16
CDY30901	Canola	cytosol	36.97	34.38
CDY45144	Canola	cytosol	36.97	34.38
CDY34646	Canola	cytosol	35.29	33.33
CDY70695	Canola	cytosol	36.97	31.88
CDY57101	Canola	cytosol	42.86	30.91
CDY27215	Canola	mitochondrion	38.66	30.87
CDX72138	Canola	mitochondrion	38.66	30.87
CDX73752	Canola	cytosol, mitochondrion	56.3	30.45
CDY67121	Canola	mitochondrion	38.66	30.26
CDY03743	Canola	extracellular	21.85	30.23
CDX67647	Canola	mitochondrion	37.82	29.8
CDY32015	Canola	mitochondrion	37.82	29.8
CDY23543	Canola	cytosol	33.61	28.57
CDY48387	Canola	cytosol	33.61	28.37
CDX73940	Canola	cytosol	32.77	27.86
CDY37032	Canola	cytosol	42.86	27.27
CDY11645	Canola	cytosol, plastid	34.45	27.15
CDY38768	Canola	cytosol, plastid	34.45	27.15
CDY35999	Canola	cytosol	31.93	27.14
CDY58647	Canola	cytosol	31.93	27.14
CDY04457	Canola	cytosol	21.85	26.53
CDY23544	Canola	cytosol	32.77	26.35
CDY22165	Canola	cytosol	31.93	26.03
CDY48388	Canola	cytosol	31.93	25.85
CDY53739	Canola	plastid	33.61	22.1
CDY38116	Canola	plastid	34.45	21.93
CDY69984	Canola	plastid	33.61	21.51
CDY51539	Canola	plastid	31.09	20.56
CDY28704	Canola	plastid	31.09	20.56
CDY27984	Canola	nucleus	31.93	18.01
CDY00656	Canola	cytosol	31.93	10.19
CDY11641	Canola	plastid	16.81	9.66

Protein Annotations

MapMan:10.6.1	MapMan:18.7.2	Gene3D:3.40.30.10	GO:A0A078GV56	UniProt:A0A078GV56	unigene:Bna.2152
EnsemblPlants:CDY29406	ProteinID:CDY29406	ProteinID:CDY29406.1	GO:GO:0003674	GO:GO:0003824	GO:GO:0005575
GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0006662	GO:GO:0008150	GO:GO:0008152
GO:GO:0009987	GO:GO:0015035	GO:GO:0019725	GO:GO:0045454	GO:GO:0055114	EnsemblPlantsGene:GSBRNA2T00043000001
InterPro:IPR013766	PFAM:PF00085	PIRSF:PIRSF000077	PRINTS:PR00421	ScanProsite:PS00194	PFscan:PS51352
PANTHER:PTHR10438	PANTHER:PTHR10438:SF293	SUPFAM:SSF52833	TIGRFAMs:TIGR01068	InterPro:Thioredoxin	InterPro:Thioredoxin-like_sf
InterPro:Thioredoxin_CS	InterPro:Thioredoxin_domain	UniParc:UPI000253EE8C	:	:	:

Description

BnaA06g13900DThioredoxin [Source:UniProtKB/TrEMBL;Acc:A0A078GV56]

Coordinates

chrLK032236:+:366962..367876

Molecular Weight (calculated)

12983.7 Da

IEP (calculated)

4.839

GRAVY (calculated)

0.240

Length

119 amino acids

Sequence
(BLAST)

001: MAAEEGQVIG CHEIDVWAVQ LDTAKQSNKL IVIDFTASWC PPCRMIAPVF ADLAKKFMSS AIFFKVDVDE LQNVAQEFGV EAMPTFVFIK DGNVVDKVVG
101: ARKEDLHATI AKHTGVATA

Best Arabidopsis Sequence Match ( AT1G19730.1 )
(BLAST)

001: MAAEEGQVIG CHTNDVWTVQ LDKAKESNKL IVIDFTASWC PPCRMIAPIF NDLAKKFMSS AIFFKVDVDE LQSVAKEFGV EAMPTFVFIK AGEVVDKLVG
101: ANKEDLQAKI VKHTGVTTA

Arabidopsis Description

TRX4Thioredoxin H4 [Source:UniProtKB/Swiss-Prot;Acc:Q39239]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.