Subcellular Localization
min:
: max
Winner_takes_all: mitochondrion, cytosol
Predictor Summary:
Predictor Summary:
- plastid 2
- mitochondrion 3
- cytosol 2
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDX77974 | Canola | cytosol | 51.36 | 99.12 |
| Bra036839.1-P | Field mustard | cytosol | 50.91 | 98.25 |
| CDX90669 | Canola | cytosol | 50.91 | 98.25 |
| CDY28996 | Canola | cytosol | 49.55 | 95.61 |
| CDY34470 | Canola | cytosol | 24.09 | 91.38 |
| AT3G51030.1 | Thale cress | cytosol | 47.27 | 91.23 |
| KRH76717 | Soybean | endoplasmic reticulum, nucleus | 40.0 | 73.33 |
| KRH28739 | Soybean | cytosol | 39.55 | 72.5 |
| VIT_04s0023g02700.t01 | Wine grape | cytosol | 37.73 | 72.17 |
| PGSC0003DMT400009306 | Potato | cytosol | 38.64 | 72.03 |
| Solyc02g084710.2.1 | Tomato | extracellular | 38.18 | 71.19 |
| GSMUA_Achr4P22400_001 | Banana | cytosol, unclear | 34.55 | 66.67 |
| VIT_18s0001g13250.t01 | Wine grape | cytosol | 34.09 | 65.79 |
| CDY53958 | Canola | cytosol | 32.27 | 60.68 |
| GSMUA_Achr2P17610_001 | Banana | cytosol | 30.0 | 57.89 |
| CDY39355 | Canola | cytosol | 30.91 | 57.14 |
| CDY36029 | Canola | cytosol | 30.45 | 56.78 |
| CDY29406 | Canola | cytosol | 30.45 | 56.3 |
| CDY43592 | Canola | cytosol | 28.18 | 50.41 |
| CDY32970 | Canola | cytosol | 28.18 | 50.41 |
| VIT_18s0001g13240.t01 | Wine grape | cytosol | 29.09 | 40.51 |
| CDY65333 | Canola | cytosol | 22.27 | 36.84 |
| CDX67442 | Canola | cytosol | 21.82 | 35.82 |
| CDX73940 | Canola | cytosol | 21.82 | 34.29 |
| CDY27290 | Canola | cytosol | 19.55 | 33.59 |
| CDY35999 | Canola | cytosol | 21.36 | 33.57 |
| CDY34646 | Canola | cytosol | 19.09 | 33.33 |
| CDY45144 | Canola | cytosol | 19.09 | 32.81 |
| CDY30901 | Canola | cytosol | 19.09 | 32.81 |
| CDY58647 | Canola | cytosol | 20.45 | 32.14 |
| CDY22165 | Canola | cytosol | 20.91 | 31.51 |
| CDY23543 | Canola | cytosol | 19.09 | 30.0 |
| CDY48387 | Canola | cytosol | 19.09 | 29.79 |
| CDY57101 | Canola | cytosol | 22.27 | 29.7 |
| CDY03743 | Canola | extracellular | 11.36 | 29.07 |
| CDY70695 | Canola | cytosol | 18.18 | 28.99 |
| CDY32015 | Canola | mitochondrion | 19.09 | 27.81 |
| CDX67647 | Canola | mitochondrion | 19.09 | 27.81 |
| CDY67121 | Canola | mitochondrion | 19.09 | 27.63 |
| CDX72138 | Canola | mitochondrion | 18.64 | 27.52 |
| CDY27215 | Canola | mitochondrion | 18.64 | 27.52 |
| CDY48388 | Canola | cytosol | 18.18 | 27.21 |
| CDY38768 | Canola | cytosol, plastid | 18.64 | 27.15 |
| CDY11645 | Canola | cytosol, plastid | 18.64 | 27.15 |
| CDY23544 | Canola | cytosol | 18.18 | 27.03 |
| CDY37032 | Canola | cytosol | 22.27 | 26.2 |
| CDY04457 | Canola | cytosol | 11.36 | 25.51 |
| CDY27984 | Canola | nucleus | 22.27 | 23.22 |
| CDY69984 | Canola | plastid | 19.55 | 23.12 |
| CDY38116 | Canola | plastid | 19.09 | 22.46 |
| CDY53739 | Canola | plastid | 17.73 | 21.55 |
| CDY51539 | Canola | plastid | 17.27 | 21.11 |
| CDY28704 | Canola | plastid | 16.82 | 20.56 |
| CDY00656 | Canola | cytosol | 24.55 | 14.48 |
| CDY11641 | Canola | plastid | 10.45 | 11.11 |
Protein Annotations
| MapMan:10.6.1 | MapMan:18.7.2 | Gene3D:3.40.30.10 | GO:A0A078CA59 | EnsemblPlants:CDX73752 | ProteinID:CDX73752 |
| ProteinID:CDX73752.1 | ncoils:Coil | GO:GO:0003674 | GO:GO:0003824 | GO:GO:0005575 | GO:GO:0005623 |
| GO:GO:0006662 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009987 | GO:GO:0015035 | GO:GO:0019725 |
| GO:GO:0045454 | EnsemblPlantsGene:GSBRNA2T00109366001 | InterPro:IPR013766 | PFAM:PF00085 | PRINTS:PR00421 | ScanProsite:PS00194 |
| PFscan:PS51352 | PANTHER:PTHR10438 | PANTHER:PTHR10438:SF370 | SUPFAM:SSF52833 | InterPro:Thioredoxin | InterPro:Thioredoxin-like_sf |
| InterPro:Thioredoxin_CS | InterPro:Thioredoxin_domain | UniParc:UPI0004EE5051 | : | : | : |
Description
BnaC08g22510D
Coordinates
chrLK031799:+:2534660..2536586
Molecular Weight (calculated)
25405.1 Da
IEP (calculated)
10.439
GRAVY (calculated)
-0.386
Length
220 amino acids
Sequence
(BLAST)
(BLAST)
001: MDWLGLRDNV CPLTLRRLAA QATVYSLWWE RNNRLHNSIS TPVSHTFKKI DRLVRNSIIA RKNLKKFSNL MRLWLKCPGI LYLKKEEEKH KQNTKRQSRS
101: VERKRKMAGE EGQVIACHTV EAWNEQLQKG NDSKTLVVVD FTASWCGPCR FIAPFFADLA KKLPNVMFLK VDIDELKSVA SDWAIESMPT FMFMKEGKIV
201: DKVVGAKKDE LQSTIAKHLA
101: VERKRKMAGE EGQVIACHTV EAWNEQLQKG NDSKTLVVVD FTASWCGPCR FIAPFFADLA KKLPNVMFLK VDIDELKSVA SDWAIESMPT FMFMKEGKIV
201: DKVVGAKKDE LQSTIAKHLA
001: MASEEGQVIA CHTVETWNEQ LQKANESKTL VVVDFTASWC GPCRFIAPFF ADLAKKLPNV LFLKVDTDEL KSVASDWAIQ AMPTFMFLKE GKILDKVVGA
101: KKDELQSTIA KHLA
101: KKDELQSTIA KHLA
Arabidopsis Description
TRX1Thioredoxin H1 [Source:UniProtKB/Swiss-Prot;Acc:P29448]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.