Subcellular Localization
min:
: max
Winner_takes_all: endoplasmic reticulum, nucleus
Predictor Summary:
Predictor Summary:
- nucleus 1
- plastid 2
- cytosol 3
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
| nucleus:
21132161
endoplasmic reticulum: 28499913 |
msms PMID:
21132161
doi
Soybean Genomics and Improvement Laboratory, USDA-ARS, Beltsville, MD 20705, USA. bret.cooper@ars.usda.gov
msms PMID:
28499913
doi
Department of Life Science and Informatics, Maebashi Institute of Technology, Maebashi 371-0816, Japan. Electronic address: ksakata@maebashi-it.ac.jp., Institute of Crop Science, National Agriculture and Food Research Organization, Tsukuba 305-8518, Japan., Institute of Crop Science, National Agriculture and Food Research Organization, Tsukuba 305-8518, Japan; Faculty of Life and Environmental Sciences, University of Tsukuba, Tsukuba 305-8572, Japan., Institute of Crop Science, National Agriculture and Food Research Organization, Tsukuba 305-8518, Japan; Faculty of Life and Environmental Sciences, University of Tsukuba, Tsukuba 305-8572, Japan. Electronic address: komatsu.setsuko.fu@u.tsukuba.ac.jp., King Abdullah University of Science and Technology (KAUST), Computational Bioscience Research Center (CBRC), Thuwal 23955-6900, Saudi Arabia.
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| KRH28739 | Soybean | cytosol | 93.33 | 93.33 |
| AT3G51030.1 | Thale cress | cytosol | 75.0 | 78.95 |
| Bra036839.1-P | Field mustard | cytosol | 74.17 | 78.07 |
| CDX77974 | Canola | cytosol | 74.17 | 78.07 |
| Bra012872.1-P | Field mustard | cytosol | 73.33 | 77.19 |
| CDY28996 | Canola | cytosol | 73.33 | 77.19 |
| CDX90669 | Canola | cytosol | 73.33 | 77.19 |
| CDY34470 | Canola | cytosol | 36.67 | 75.86 |
| VIT_04s0023g02700.t01 | Wine grape | cytosol | 69.17 | 72.17 |
| PGSC0003DMT400009306 | Potato | cytosol | 70.83 | 72.03 |
| KRH51778 | Soybean | endoplasmic reticulum | 70.0 | 71.79 |
| Solyc02g084710.2.1 | Tomato | extracellular | 69.17 | 70.34 |
| VIT_18s0001g13250.t01 | Wine grape | cytosol | 65.83 | 69.3 |
| KRH61100 | Soybean | cytosol | 65.0 | 66.67 |
| KRH15131 | Soybean | cytosol, nucleus | 65.83 | 66.39 |
| GSMUA_Achr4P22400_001 | Banana | cytosol, unclear | 62.5 | 65.79 |
| KRH05879 | Soybean | endoplasmic reticulum | 65.83 | 64.23 |
| GSMUA_Achr2P17610_001 | Banana | cytosol | 57.5 | 60.53 |
| TraesCS1D01G327500.1 | Wheat | cytosol, plastid | 54.17 | 54.62 |
| TraesCS1B01G339000.1 | Wheat | cytosol | 53.33 | 54.24 |
| HORVU1Hr1G075560.1 | Barley | cytosol | 55.0 | 54.1 |
| TraesCS1B01G338800.1 | Wheat | cytosol, golgi, plastid, unclear | 55.0 | 51.97 |
| TraesCS7A01G562100.1 | Wheat | cytosol | 45.83 | 51.89 |
| TraesCS1A01G325600.1 | Wheat | cytosol | 55.0 | 50.77 |
| OQU78269 | Sorghum | cytosol | 52.5 | 50.0 |
| Zm00001d038652_P003 | Maize | cytosol | 51.67 | 48.44 |
| KRH40137 | Soybean | endoplasmic reticulum | 52.5 | 48.09 |
| KRH01123 | Soybean | cytosol | 49.17 | 47.97 |
| KRG99185 | Soybean | cytosol, plastid | 45.0 | 44.63 |
| KRH01124 | Soybean | endoplasmic reticulum | 49.17 | 44.36 |
| KRH45834 | Soybean | cytosol, plastid | 44.17 | 43.8 |
| KRH69384 | Soybean | cytosol | 45.83 | 42.97 |
| KRH74753 | Soybean | cytosol | 44.17 | 42.74 |
| VIT_18s0001g13240.t01 | Wine grape | cytosol | 55.83 | 42.41 |
| KRH40138 | Soybean | cytosol, plastid | 44.17 | 42.4 |
| KRH74754 | Soybean | cytosol | 43.33 | 41.27 |
| KRH69383 | Soybean | cytosol | 43.33 | 40.94 |
| CDX73752 | Canola | cytosol, mitochondrion | 73.33 | 40.0 |
| KRH00477 | Soybean | cytosol | 45.83 | 39.57 |
| TraesCS7D01G001000.1 | Wheat | cytosol | 36.67 | 38.94 |
| KRH09556 | Soybean | cytosol | 43.33 | 37.96 |
| KRH40136 | Soybean | endoplasmic reticulum | 49.17 | 37.58 |
| KRH69387 | Soybean | plastid | 42.5 | 36.96 |
| KRH74748 | Soybean | plastid | 42.5 | 36.96 |
| KRH22228 | Soybean | cytosol | 35.83 | 35.25 |
| KRH10686 | Soybean | cytosol | 35.0 | 33.87 |
| KRH27111 | Soybean | nucleus | 35.0 | 33.33 |
| KRH64869 | Soybean | cytosol | 42.5 | 33.33 |
| KRH01119 | Soybean | cytosol | 38.33 | 32.86 |
| KRH21649 | Soybean | cytosol, plastid | 34.17 | 32.8 |
| KRH25890 | Soybean | nucleus | 34.17 | 32.54 |
| KRH40706 | Soybean | mitochondrion | 44.17 | 31.36 |
| KRH55615 | Soybean | cytosol | 30.83 | 29.37 |
| KRH33304 | Soybean | cytosol | 30.0 | 28.57 |
| KRH00940 | Soybean | nucleus, plastid | 34.17 | 22.91 |
| KRH40285 | Soybean | plastid | 34.17 | 22.65 |
Protein Annotations
| MapMan:10.6.1 | MapMan:18.7.2 | Gene3D:3.40.30.10 | EMBL:ACUP02000636 | EnsemblPlantsGene:GLYMA_01G170300 | GO:GO:0003674 |
| GO:GO:0003824 | GO:GO:0004791 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005737 |
| GO:GO:0006662 | GO:GO:0006950 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009987 | GO:GO:0015035 |
| GO:GO:0016671 | GO:GO:0019725 | GO:GO:0034599 | GO:GO:0045454 | GO:GO:0047134 | GO:GO:0055114 |
| GO:GO:0098869 | UniProt:I1J8Q1 | InterPro:IPR013766 | EnsemblPlants:KRH76717 | ProteinID:KRH76717 | ProteinID:KRH76717.1 |
| PFAM:PF00085 | PIRSF:PIRSF000077 | PRINTS:PR00421 | ScanProsite:PS00194 | PFscan:PS51352 | PANTHER:PTHR10438 |
| PANTHER:PTHR10438:SF370 | SUPFAM:SSF52833 | InterPro:Thioredoxin | InterPro:Thioredoxin-like_sf | InterPro:Thioredoxin_CS | InterPro:Thioredoxin_domain |
| UniParc:UPI00005AF265 | : | : | : | : | : |
Description
hypothetical protein
Coordinates
chr1:-:50769928..50773193
Molecular Weight (calculated)
13275.9 Da
IEP (calculated)
5.199
GRAVY (calculated)
-0.062
Length
120 amino acids
Sequence
(BLAST)
(BLAST)
001: MAGSSEEGQV ISCHTVEEWN DQLQKGNESK KLIVVDFTAS WCGPCRFIAP FLAELAKKFT SVIFLKVDVD ELKSVSQDWA IEAMPTFVFV KEGTLLDKVV
101: GAKKDELQQK IQKHVASASA
101: GAKKDELQQK IQKHVASASA
001: MASEEGQVIA CHTVETWNEQ LQKANESKTL VVVDFTASWC GPCRFIAPFF ADLAKKLPNV LFLKVDTDEL KSVASDWAIQ AMPTFMFLKE GKILDKVVGA
101: KKDELQSTIA KHLA
101: KKDELQSTIA KHLA
Arabidopsis Description
TRX1Thioredoxin H1 [Source:UniProtKB/Swiss-Prot;Acc:P29448]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.