CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 2
cytosol 4
peroxisome 1
vacuole 1
mitochondrion 2
plastid 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
KRH00077
KRH49226
KRH62427
KRH75751

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G53990.1	KRH00077	AT3G53990.1	21798944
AT3G53990.1	KRH49226	AT3G53990.1	21798944
AT3G53990.1	KRH62427	AT3G53990.1	21798944
AT3G53990.1	KRH75751	AT3G53990.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH00077	Soybean	cytosol	91.08	91.08
KRH75751	Soybean	endoplasmic reticulum	77.71	74.39
KRH62427	Soybean	endoplasmic reticulum	77.71	73.05
CDY54032	Canola	plastid	14.65	67.65
AT3G53990.1	Thale cress	cytosol	68.79	67.5
Bra007038.1-P	Field mustard	cytosol	66.88	66.46
CDX73512	Canola	cytosol	66.24	66.24
Bra003163.1-P	Field mustard	cytosol	66.88	66.04
CDX67580	Canola	cytosol	66.88	66.04
CDY07565	Canola	cytosol	66.24	65.41
CDY13163	Canola	cytosol	66.88	64.81
CDX76180	Canola	cytosol	66.88	64.81
Bra014852.1-P	Field mustard	cytosol	66.88	64.81
VIT_08s0007g01430.t01	Wine grape	cytosol	67.52	64.63
Solyc09g011670.2.1	Tomato	cytosol, nucleus	67.52	64.63
Solyc09g011660.2.1	Tomato	cytosol	67.52	64.63
PGSC0003DMT400030606	Potato	cytosol	67.52	64.24
PGSC0003DMT400030609	Potato	cytosol	24.84	62.9
KRH29731	Soybean	endoplasmic reticulum	64.97	62.2
KRH24723	Soybean	nucleus	63.69	60.98
GSMUA_AchrUn_...	Banana	cytosol	50.96	60.61
Solyc10g086670.1.1	Tomato	cytosol	59.24	56.02
PGSC0003DMT400049227	Potato	cytosol	59.24	56.02
EES18332	Sorghum	cytosol	58.6	55.42
GSMUA_Achr6P23610_001	Banana	cytosol	56.05	55.0
TraesCS1D01G279800.1	Wheat	cytosol, golgi, unclear	56.69	53.61
TraesCS1B01G289700.1	Wheat	cytosol	56.69	53.61
TraesCS1A01G280700.1	Wheat	cytosol	56.69	53.61
GSMUA_Achr3P17670_001	Banana	mitochondrion	59.24	50.27
KRH17289	Soybean	cytosol	52.87	50.0
EES03887	Sorghum	cytosol	49.04	48.73
GSMUA_Achr9P03740_001	Banana	cytosol	49.68	47.27
Os01t0849600-01	Rice	cytosol, plastid	47.13	45.68
KRH72936	Soybean	cytosol	42.68	45.58
Os05t0453700-01	Rice	cytosol	51.59	42.86
Zm00001d012382_P002	Maize	cytosol	51.59	42.41
KRH11952	Soybean	cytosol	42.04	40.24
HORVU3Hr1G085660.9	Barley	cytosol	46.5	37.82
Zm00001d038351_P004	Maize	cytosol	53.5	35.15
KRH36979	Soybean	endoplasmic reticulum, extracellular, vacuole	27.39	29.66

Protein Annotations

EMBL:ACUP02004341	EnsemblPlants:KRH49226	EnsemblPlantsGene:GLYMA_07G140800	Gene3D:3.40.50.620	GO:GO:0006950	GO:GO:0008150
InterPro:IPR014729	InterPro:Rossmann-like_a/b/a_fold	InterPro:Universal_stress_UspA	InterPro:UspA	PANTHER:PTHR31964	PANTHER:PTHR31964:SF23
PFAM:PF00582	PRINTS:PR01438	ProteinID:KRH49226	ProteinID:KRH49226.1	SUPFAM:SSF52402	UniParc:UPI0002338D8D
UniProt:I1KK69	MapMan:35.2	:	:	:	:

Description

hypothetical protein

Coordinates

chr7:-:16670747..16672540

Molecular Weight (calculated)

17626.3 Da

IEP (calculated)

6.352

GRAVY (calculated)

-0.146

Length

157 amino acids

Sequence
(BLAST)

001: MVKDRKVGVA LDFSNSSKIA LKWAIENLAD KCHTFYIIHV NPNSSDDRNQ LWAKSGSPLI PLTEFREEEI MKHYGVQNDA EVLDLLDTAA RQKEVNVVVK
101: LHWGDVREKL LDSIEDLKLD SLVLGSRGLG TIQRMILGSV SNFVMTHAPC PVTIVKE

Best Arabidopsis Sequence Match ( AT3G53990.1 )
(BLAST)

001: MPKDRNIGIA MDFSESSKNA LKWAIENLAD KGDTIYIIHT LPLSGDESRN SLWFKSGSPL IPLAEFREPE IMEKYGVKTD IACLDMLDTG SRQKEVHVVT
101: KLYWGDAREK LVDAVKDLKL DSIVMGSRGL SALQRIIMGS VSSFVIQHAP CPVTVVKDNE

Arabidopsis Description

AT3G53990 protein [Source:UniProtKB/TrEMBL;Acc:Q9M328]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.