Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- nucleus 3
- cytosol 3
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
| locusB | locations |
|---|---|
| PGSC0003DMT400030606 | |
| PGSC0003DMT400030609 | |
| PGSC0003DMT400049227 |
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT3G53990.1 | PGSC0003DMT400030606 | AT3G53990.1 | 21798944 |
| AT3G53990.1 | PGSC0003DMT400030609 | AT3G53990.1 | 21798944 |
| AT3G53990.1 | PGSC0003DMT400049227 | AT3G53990.1 | 21798944 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Solyc09g011670.2.1 | Tomato | cytosol, nucleus | 88.48 | 89.02 |
| KRH75751 | Soybean | endoplasmic reticulum | 75.76 | 76.22 |
| VIT_08s0007g01430.t01 | Wine grape | cytosol | 74.55 | 75.0 |
| KRH62427 | Soybean | endoplasmic reticulum | 73.33 | 72.46 |
| AT3G53990.1 | Thale cress | cytosol | 67.88 | 70.0 |
| PGSC0003DMT400030609 | Potato | cytosol | 26.06 | 69.35 |
| Bra003163.1-P | Field mustard | cytosol | 66.06 | 68.55 |
| Bra007038.1-P | Field mustard | cytosol | 65.45 | 68.35 |
| KRH00077 | Soybean | cytosol | 64.24 | 67.52 |
| KRH49226 | Soybean | cytosol | 64.24 | 67.52 |
| Bra014852.1-P | Field mustard | cytosol | 64.24 | 65.43 |
| GSMUA_AchrUn_... | Banana | cytosol | 52.12 | 65.15 |
| PGSC0003DMT400049227 | Potato | cytosol | 64.85 | 64.46 |
| EES18332 | Sorghum | cytosol | 61.21 | 60.84 |
| GSMUA_Achr6P23610_001 | Banana | cytosol | 58.18 | 60.0 |
| EES03887 | Sorghum | cytosol | 55.15 | 57.59 |
| TraesCS1D01G279800.1 | Wheat | cytosol, golgi, unclear | 57.58 | 57.23 |
| TraesCS1B01G289700.1 | Wheat | cytosol | 57.58 | 57.23 |
| Os01t0849600-01 | Rice | cytosol, plastid | 55.15 | 56.17 |
| TraesCS1A01G280700.1 | Wheat | cytosol | 56.36 | 56.02 |
| GSMUA_Achr9P03740_001 | Banana | cytosol | 55.15 | 55.15 |
| GSMUA_Achr3P17670_001 | Banana | mitochondrion | 60.61 | 54.05 |
| PGSC0003DMT400060724 | Potato | cytosol | 48.48 | 49.38 |
| CDY54033 | Canola | cytosol | 27.88 | 47.42 |
| Zm00001d012382_P002 | Maize | cytosol | 54.55 | 47.12 |
| Os05t0453700-01 | Rice | cytosol | 50.91 | 44.44 |
| PGSC0003DMT400056226 | Potato | cytosol, extracellular | 41.82 | 42.33 |
| HORVU3Hr1G085660.9 | Barley | cytosol | 49.09 | 41.97 |
| Zm00001d038351_P004 | Maize | cytosol | 52.73 | 36.4 |
Protein Annotations
| EnsemblPlants:PGSC0003DMT400030606 | EnsemblPlantsGene:PGSC0003DMG400011721 | EntrezGene:102601976 | EntrezGene:102602306 | Gene3D:3.40.50.620 | GO:GO:0006950 |
| GO:GO:0008150 | InterPro:IPR014729 | InterPro:Rossmann-like_a/b/a_fold | InterPro:Universal_stress_UspA | InterPro:UspA | PANTHER:PTHR31964 |
| PANTHER:PTHR31964:SF23 | PFAM:PF00582 | PGSC:PGSC0003DMG400011721 | PRINTS:PR01438 | SUPFAM:SSF52402 | UniParc:UPI0002957861 |
| UniProt:M1AUH7 | MapMan:35.2 | : | : | : | : |
Description
Universal stress protein family protein [Source:PGSC_GENE;Acc:PGSC0003DMG400011721]
Coordinates
chr9:+:933432..943115
Molecular Weight (calculated)
18663.5 Da
IEP (calculated)
6.934
GRAVY (calculated)
-0.216
Length
165 amino acids
Sequence
(BLAST)
(BLAST)
001: MVKDRTIGVA MDFSKSSKTA LKWAIDNLAD KDDTFYIIHI KTHSSDESRN KLWAQSGSPL IPLAEFREPE VLEKYGVEID IELLDMLDTA SRQKEIKIVI
101: KLYWGDAREK LCEAVEDLKL NSLVMGSRGL STIQRIFLGS VTNYVFSNAS CHVTIIKDPA RSKHC
101: KLYWGDAREK LCEAVEDLKL NSLVMGSRGL STIQRIFLGS VTNYVFSNAS CHVTIIKDPA RSKHC
001: MPKDRNIGIA MDFSESSKNA LKWAIENLAD KGDTIYIIHT LPLSGDESRN SLWFKSGSPL IPLAEFREPE IMEKYGVKTD IACLDMLDTG SRQKEVHVVT
101: KLYWGDAREK LVDAVKDLKL DSIVMGSRGL SALQRIIMGS VSSFVIQHAP CPVTVVKDNE
101: KLYWGDAREK LVDAVKDLKL DSIVMGSRGL SALQRIIMGS VSSFVIQHAP CPVTVVKDNE
Arabidopsis Description
AT3G53990 protein [Source:UniProtKB/TrEMBL;Acc:Q9M328]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.