Factsheet for GSMUA_Achr6P23610_001

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

plastid 2
mitochondrion 4
cytosol 2
peroxisome 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
GSMUA_Achr3P17670_001
GSMUA_Achr6P23610_001
GSMUA_Achr9P03740_001
GSMUA_AchrUn_...

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G53990.1	GSMUA_Achr3P17670_001	AT3G53990.1	21798944
AT3G53990.1	GSMUA_Achr6P23610_001	AT3G53990.1	21798944
AT3G53990.1	GSMUA_Achr9P03740_001	AT3G53990.1	21798944
AT3G53990.1	GSMUA_AchrUn_...	AT3G53990.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
GSMUA_Achr3P17670_001	Banana	mitochondrion	76.25	65.95
VIT_08s0007g01430.t01	Wine grape	cytosol	66.25	64.63
EES18332	Sorghum	cytosol	65.0	62.65
GSMUA_AchrUn_...	Banana	cytosol	50.62	61.36
KRH24723	Soybean	nucleus	62.5	60.98
KRH75751	Soybean	endoplasmic reticulum	61.88	60.37
KRH29731	Soybean	endoplasmic reticulum	61.88	60.37
Solyc09g011660.2.1	Tomato	cytosol	61.25	59.76
CDY54032	Canola	plastid	12.5	58.82
PGSC0003DMT400030606	Potato	cytosol	60.0	58.18
KRH62427	Soybean	endoplasmic reticulum	60.62	58.08
TraesCS1B01G289700.1	Wheat	cytosol	60.0	57.83
TraesCS1D01G279800.1	Wheat	cytosol, golgi, unclear	60.0	57.83
Os01t0849600-01	Rice	cytosol, plastid	58.12	57.41
TraesCS1A01G280700.1	Wheat	cytosol	59.38	57.23
EES03887	Sorghum	cytosol	56.25	56.96
AT3G53990.1	Thale cress	cytosol	56.88	56.88
Solyc09g011670.2.1	Tomato	cytosol, nucleus	58.12	56.71
CDX73512	Canola	cytosol	55.62	56.69
Bra007038.1-P	Field mustard	cytosol	55.62	56.33
VIT_06s0004g05730.t01	Wine grape	cytosol	57.5	56.1
KRH49226	Soybean	cytosol	55.0	56.05
KRH00077	Soybean	cytosol	54.38	55.41
PGSC0003DMT400030609	Potato	cytosol	21.25	54.84
GSMUA_Achr9P03740_001	Banana	cytosol	56.25	54.55
Bra003163.1-P	Field mustard	cytosol	53.75	54.09
CDX67580	Canola	cytosol	53.75	54.09
CDX76180	Canola	cytosol	54.38	53.7
Bra014852.1-P	Field mustard	cytosol	54.38	53.7
CDY13163	Canola	cytosol	54.38	53.7
PGSC0003DMT400049227	Potato	cytosol	55.62	53.61
CDY07565	Canola	cytosol	53.12	53.46
Solyc10g086670.1.1	Tomato	cytosol	55.0	53.01
GSMUA_Achr10P...	Banana	cytosol	50.0	49.38
Zm00001d012382_P002	Maize	cytosol	55.0	46.07
Os05t0453700-01	Rice	cytosol	51.88	43.92
HORVU3Hr1G085660.9	Barley	cytosol	52.5	43.52
GSMUA_Achr11P...	Banana	cytosol	43.12	42.59
CDY54033	Canola	cytosol	24.38	40.21
GSMUA_Achr2P22060_001	Banana	cytosol	39.38	39.62
GSMUA_Achr8P06380_001	Banana	cytosol	15.62	38.46
Zm00001d038351_P004	Maize	cytosol	53.75	35.98
GSMUA_Achr6P08870_001	Banana	extracellular, plasma membrane	17.5	11.81

Protein Annotations

EnsemblPlants:GSMUA_Achr6P23610_001	EnsemblPlants:GSMUA_Achr6T23610_001	EnsemblPlantsGene:GSMUA_Achr6G23610_001	Gene3D:3.40.50.620	GO:GO:0006950	GO:GO:0008150
InterPro:IPR014729	InterPro:Rossmann-like_a/b/a_fold	InterPro:Universal_stress_UspA	InterPro:UspA	PANTHER:PTHR31964	PANTHER:PTHR31964:SF23
PFAM:PF00582	PRINTS:PR01438	SUPFAM:SSF52402	UniParc:UPI000296DF7F	UniProt:M0T9K9	MapMan:35.2

Description

Putative Universal stress protein A-like protein [Source:GMGC_GENE;Acc:GSMUA_Achr6G23610_001]

Coordinates

chr6:-:23837679..23853031

Molecular Weight (calculated)

17451.4 Da

IEP (calculated)

8.734

GRAVY (calculated)

0.004

Length

160 amino acids

Sequence
(BLAST)

001: MAGGGGRKIG LALDFSKSSK AALRWAIDNL LRKGDTILLL HIMPDKGDEA KHPLWIQSGS PLIPLTEFRQ PDVMKHYELD VNMEVLDELD TASRQKGAII
101: VAKLFWGDAR EKLCQAVGDL GLDSLVMGSR GVSPIRRILL GSVTNYVLTN ATCPVTVVKN

Best Arabidopsis Sequence Match ( AT3G53990.1 )
(BLAST)

001: MPKDRNIGIA MDFSESSKNA LKWAIENLAD KGDTIYIIHT LPLSGDESRN SLWFKSGSPL IPLAEFREPE IMEKYGVKTD IACLDMLDTG SRQKEVHVVT
101: KLYWGDAREK LVDAVKDLKL DSIVMGSRGL SALQRIIMGS VSSFVIQHAP CPVTVVKDNE

Arabidopsis Description

AT3G53990 protein [Source:UniProtKB/TrEMBL;Acc:Q9M328]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.