Factsheet for Solyc09g011670.2.1

Subcellular Localization

min:

: max

Winner_takes_all: nucleus, cytosol

Predictor Summary:

cytosol 4
nucleus 2
mitochondrion 1

Predictors

GFP

MS/MS

Papers

nucleus: 28394025

msms PMID: 28394025 doi

AJM Howden, R Stam, V Martinez Heredia, GB Motion, S Ten Have, K Hodge, TM Marques Monteiro Amaro, E Huitema

Cell and Molecular Sciences, JHI, Invergowrie, Dundee, DD2 5DA, UK., Division of Plant Science, School of Life Sciences, University of Dundee at the James Hutton Institute (JHI), Invergowrie, Dundee, DD2 5DA, UK., Dundee Effector Consortium, JHI, Invergowrie, Dundee, DD2 5DA, UK., Section of Population Genetics, Technische Universität München, 85354, Freising, Germany., Wellcome Trust Centre for Gene Regulation and Expression, School of Life Sciences, University of Dundee, Dow Street, Dundee, DD1 5EH, UK.

PPI

Inferred distinct locusB in Crop

locusB	locations
Solyc09g011660.2.1
Solyc09g011670.2.1
Solyc10g086670.1.1

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G53990.1	Solyc09g011660.2.1	AT3G53990.1	21798944
AT3G53990.1	Solyc09g011670.2.1	AT3G53990.1	21798944
AT3G53990.1	Solyc10g086670.1.1	AT3G53990.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400030606	Potato	cytosol	89.02	88.48
Solyc09g011660.2.1	Tomato	cytosol	87.8	87.8
VIT_08s0007g01430.t01	Wine grape	cytosol	74.39	74.39
KRH75751	Soybean	endoplasmic reticulum	73.78	73.78
AT3G53990.1	Thale cress	cytosol	71.34	73.12
Bra007038.1-P	Field mustard	cytosol	68.9	71.52
KRH62427	Soybean	endoplasmic reticulum	71.95	70.66
Bra003163.1-P	Field mustard	cytosol	67.68	69.81
Bra014852.1-P	Field mustard	cytosol	68.9	69.75
KRH00077	Soybean	cytosol	64.63	67.52
KRH49226	Soybean	cytosol	64.63	67.52
GSMUA_AchrUn_...	Banana	cytosol	50.0	62.12
Solyc10g086670.1.1	Tomato	cytosol	62.2	61.45
EES18332	Sorghum	cytosol	60.98	60.24
GSMUA_Achr6P23610_001	Banana	cytosol	56.71	58.12
TraesCS1D01G279800.1	Wheat	cytosol, golgi, unclear	57.32	56.63
TraesCS1B01G289700.1	Wheat	cytosol	57.32	56.63
EES03887	Sorghum	cytosol	54.27	56.33
TraesCS1A01G280700.1	Wheat	cytosol	56.1	55.42
Os01t0849600-01	Rice	cytosol, plastid	54.27	54.94
GSMUA_Achr9P03740_001	Banana	cytosol	53.66	53.33
GSMUA_Achr3P17670_001	Banana	mitochondrion	59.76	52.97
Solyc04g014600.2.1	Tomato	nucleus	49.39	50.0
CDY54033	Canola	cytosol	27.44	46.39
Zm00001d012382_P002	Maize	cytosol	53.66	46.07
Os05t0453700-01	Rice	cytosol	50.61	43.92
Solyc01g059930.2.1	Tomato	cytosol, extracellular	41.46	41.72
HORVU3Hr1G085660.9	Barley	cytosol	46.95	39.9
Zm00001d038351_P004	Maize	cytosol	51.83	35.56

Protein Annotations

EnsemblPlants:Solyc09g011670.2.1	EnsemblPlantsGene:Solyc09g011670.2	Gene3D:3.40.50.620	GO:GO:0006950	GO:GO:0008150	InterPro:IPR014729
InterPro:Rossmann-like_a/b/a_fold	InterPro:Universal_stress_UspA	InterPro:UspA	PANTHER:PTHR31964	PANTHER:PTHR31964:SF23	PFAM:PF00582
PRINTS:PR01438	SUPFAM:SSF52402	UniParc:UPI000276B345	UniProt:K4CRJ3	MapMan:35.2	:

Description

No Description!

Coordinates

chr9:-:4913443..4917118

Molecular Weight (calculated)

18705.6 Da

IEP (calculated)

6.679

GRAVY (calculated)

-0.280

Length

164 amino acids

Sequence
(BLAST)

001: MVKDRTIGVA MDFSKSSKTA LKWAIDNLAD KDDIFYIIHI KNHSSDESRN KLWAKSGSPL IPLAEFREPE VLEKYGVEID IELLDMLDTA SRQKEIKFVT
101: KLYWGDARER LCEAVEDLKL NSLVMGSRGL TTLQRIFMGS VTNYVMSHAT CPVTVVKDPD FHKH

Best Arabidopsis Sequence Match ( AT3G53990.1 )
(BLAST)

001: MPKDRNIGIA MDFSESSKNA LKWAIENLAD KGDTIYIIHT LPLSGDESRN SLWFKSGSPL IPLAEFREPE IMEKYGVKTD IACLDMLDTG SRQKEVHVVT
101: KLYWGDAREK LVDAVKDLKL DSIVMGSRGL SALQRIIMGS VSSFVIQHAP CPVTVVKDNE

Arabidopsis Description

AT3G53990 protein [Source:UniProtKB/TrEMBL;Acc:Q9M328]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.