Factsheet for GSMUA_Achr9P03740_001

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

plastid 1
cytosol 3
nucleus 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus, plastid
BaCelLo:	plastid
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

Inferred distinct locusB in Crop

locusB	locations
GSMUA_Achr3P17670_001
GSMUA_Achr6P23610_001
GSMUA_Achr9P03740_001
GSMUA_AchrUn_...

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G53990.1	GSMUA_Achr3P17670_001	AT3G53990.1	21798944
AT3G53990.1	GSMUA_Achr6P23610_001	AT3G53990.1	21798944
AT3G53990.1	GSMUA_Achr9P03740_001	AT3G53990.1	21798944
AT3G53990.1	GSMUA_AchrUn_...	AT3G53990.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
GSMUA_AchrUn_...	Banana	cytosol	60.0	75.0
GSMUA_Achr6P23610_001	Banana	cytosol	54.55	56.25
Solyc09g011660.2.1	Tomato	cytosol	55.76	56.1
CDY54032	Canola	plastid	11.52	55.88
VIT_08s0007g01430.t01	Wine grape	cytosol	55.15	55.49
PGSC0003DMT400030606	Potato	cytosol	55.15	55.15
VIT_06s0004g05730.t01	Wine grape	cytosol	53.33	53.66
Solyc09g011670.2.1	Tomato	cytosol, nucleus	53.33	53.66
KRH75751	Soybean	endoplasmic reticulum	52.12	52.44
KRH29731	Soybean	endoplasmic reticulum	51.52	51.83
KRH62427	Soybean	endoplasmic reticulum	52.12	51.5
GSMUA_Achr3P17670_001	Banana	mitochondrion	57.58	51.35
CDX73512	Canola	cytosol	48.48	50.96
KRH24723	Soybean	nucleus	50.3	50.61
Bra007038.1-P	Field mustard	cytosol	47.88	50.0
KRH49226	Soybean	cytosol	47.27	49.68
CDX67580	Canola	cytosol	47.27	49.06
Bra003163.1-P	Field mustard	cytosol	47.27	49.06
KRH00077	Soybean	cytosol	46.67	49.04
AT3G53990.1	Thale cress	cytosol	47.27	48.75
CDY07565	Canola	cytosol	46.67	48.43
Bra014852.1-P	Field mustard	cytosol	47.27	48.15
CDY13163	Canola	cytosol	47.27	48.15
CDX76180	Canola	cytosol	47.27	48.15
PGSC0003DMT400049227	Potato	cytosol	47.27	46.99
Solyc10g086670.1.1	Tomato	cytosol	46.06	45.78
GSMUA_Achr10P...	Banana	cytosol	42.42	43.21
PGSC0003DMT400030609	Potato	cytosol	15.76	41.94
GSMUA_Achr11P...	Banana	cytosol	37.58	38.27
GSMUA_Achr8P06380_001	Banana	cytosol	13.94	35.38
CDY54033	Canola	cytosol	20.61	35.05
GSMUA_Achr2P22060_001	Banana	cytosol	33.33	34.59
GSMUA_Achr6P08870_001	Banana	extracellular, plasma membrane	12.12	8.44

Protein Annotations

EnsemblPlants:GSMUA_Achr9P03740_001	EnsemblPlants:GSMUA_Achr9T03740_001	EnsemblPlantsGene:GSMUA_Achr9G03740_001	Gene3D:3.40.50.620	GO:GO:0006950	GO:GO:0008150
InterPro:IPR014729	InterPro:Rossmann-like_a/b/a_fold	InterPro:Universal_stress_UspA	InterPro:UspA	PANTHER:PTHR31964	PANTHER:PTHR31964:SF23
PFAM:PF00582	PRINTS:PR01438	SUPFAM:SSF52402	UniParc:UPI000296D80E	UniProt:M0TX83	MapMan:35.2

Description

Putative Universal stress protein A-like protein [Source:GMGC_GENE;Acc:GSMUA_Achr9G03740_001]

Coordinates

chr9:+:2571724..2574452

Molecular Weight (calculated)

18405.3 Da

IEP (calculated)

8.484

GRAVY (calculated)

-0.188

Length

165 amino acids

Sequence
(BLAST)

001: MAGDRKIGVA LDFSSSSKRA LQWAIDNLLD PGETLIVLHV VRPKSFFHGA GSKHSSDARP LIPLTERREL DLLKSYDLDV DTDVHDMLEA ASKQKEAKIV
101: MKLYMGDARE KLCEAAQELK LDSLVMGCRG LTQIQRIFLG SVSNYVLSNV SCPVTVIKDT NFKRR

Best Arabidopsis Sequence Match ( AT3G53990.1 )
(BLAST)

001: MPKDRNIGIA MDFSESSKNA LKWAIENLAD KGDTIYIIHT LPLSGDESRN SLWFKSGSPL IPLAEFREPE IMEKYGVKTD IACLDMLDTG SRQKEVHVVT
101: KLYWGDAREK LVDAVKDLKL DSIVMGSRGL SALQRIIMGS VSSFVIQHAP CPVTVVKDNE

Arabidopsis Description

AT3G53990 protein [Source:UniProtKB/TrEMBL;Acc:Q9M328]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.