CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

plastid 2
cytosol 2
mitochondrion 2
peroxisome 1
nucleus 2

Predictors

GFP

MS/MS

Papers

nucleus: 21132161
endoplasmic reticulum: 27224218

msms PMID: 21132161 doi

B Cooper, KB Campbell, J Feng, WM Garrett, R Frederick

Soybean Genomics and Improvement Laboratory, USDA-ARS, Beltsville, MD 20705, USA. bret.cooper@ars.usda.gov

msms PMID: 27224218 doi

X Wang, S Komatsu

Graduate School of Life and Environmental Sciences, University of Tsukuba , Tsukuba 305-8572, Japan., National Institute of Crop Science, National Agriculture and Food Research Organization , Tsukuba 305-8518, Japan.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH29731	Soybean	endoplasmic reticulum	92.07	92.07
KRH00077	Soybean	cytosol	62.8	65.61
KRH49226	Soybean	cytosol	60.98	63.69
VIT_06s0004g05730.t01	Wine grape	cytosol	63.41	63.41
KRH75751	Soybean	endoplasmic reticulum	62.8	62.8
GSMUA_Achr6P23610_001	Banana	cytosol	60.98	62.5
KRH62427	Soybean	endoplasmic reticulum	62.8	61.68
EES18332	Sorghum	cytosol	62.2	61.45
GSMUA_AchrUn_...	Banana	cytosol	49.39	61.36
Os01t0849600-01	Rice	cytosol, plastid	57.32	58.02
TraesCS1B01G289700.1	Wheat	cytosol	56.1	55.42
TraesCS1D01G279800.1	Wheat	cytosol, golgi, unclear	56.1	55.42
GSMUA_Achr3P17670_001	Banana	mitochondrion	62.2	55.14
EES03887	Sorghum	cytosol	52.44	54.43
TraesCS1A01G280700.1	Wheat	cytosol	54.88	54.22
KRH17289	Soybean	cytosol	52.44	51.81
KRH72936	Soybean	cytosol	45.73	51.02
GSMUA_Achr9P03740_001	Banana	cytosol	50.61	50.3
Zm00001d012382_P002	Maize	cytosol	54.88	47.12
Os05t0453700-01	Rice	cytosol	53.05	46.03
HORVU3Hr1G085660.9	Barley	cytosol	51.22	43.52
KRH11952	Soybean	cytosol	43.29	43.29
Zm00001d038351_P004	Maize	cytosol	56.1	38.49
KRH36979	Soybean	endoplasmic reticulum, extracellular, vacuole	30.49	34.48

Protein Annotations

EMBL:ACUP02007184	EMBL:BT090638	EnsemblPlants:KRH24723	EnsemblPlantsGene:GLYMA_12G058500	EntrezGene:100306505	Gene3D:3.40.50.620
GO:GO:0006950	GO:GO:0008150	InterPro:IPR014729	InterPro:Rossmann-like_a/b/a_fold	InterPro:Universal_stress_UspA	InterPro:UspA
PANTHER:PTHR31964	PANTHER:PTHR31964:SF23	PFAM:PF00582	PRINTS:PR01438	ProteinID:KRH24723	ProteinID:KRH24723.1
SUPFAM:SSF52402	UniParc:UPI0001B150EA	UniProt:C6SZN6	MapMan:35.2	:	:

Description

hypothetical protein

Coordinates

chr12:+:4254166..4256321

Molecular Weight (calculated)

17947.5 Da

IEP (calculated)

5.701

GRAVY (calculated)

-0.055

Length

164 amino acids

Sequence
(BLAST)

001: MSSDRNIGVA LDFSKGSKIA LKWAIDNLLR NGDILYIVHI KPSGGSEFRN LLWSTTGSPL IPLSEFREKE VMHHYEVDTD AEVLDLLDTA SREKQVTVVA
101: KLYWGDAREK IVEAVGDLKL DSLVMGSRGL GAIQRVLLGS VTNYVTTNAS CPITIVKDSA PSTN

Best Arabidopsis Sequence Match ( AT3G17020.1 )
(BLAST)

001: MAESGGRRIG VAVDFSDCSK KALSWAIDNV VRDGDHLILI TIAHDMNYEE GEMQLWETVG SPFIPMSEFS DAAVMKKYAL KPDAETLDIV NTAARKKTIT
101: VVMKIYWGDP REKICAAAEQ IPLSSLVMGN RGLGGLKRMI MGSVSNHVVN NVACPVTVVK AHI

Arabidopsis Description

AT3g17020/K14A17_14 [Source:UniProtKB/TrEMBL;Acc:Q9LSP5]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.