CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: endoplasmic reticulum

Predictor Summary:

nucleus 3
cytosol 2
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	endoplasmic reticulum
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	cytosol

endoplasmic reticulum: 27224218

msms PMID: 27224218 doi

X Wang, S Komatsu

Graduate School of Life and Environmental Sciences, University of Tsukuba , Tsukuba 305-8572, Japan., National Institute of Crop Science, National Agriculture and Food Research Organization , Tsukuba 305-8518, Japan.

PPI

Inferred distinct locusB in Crop

locusB	locations
KRH00077
KRH49226
KRH62427
KRH75751

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G53990.1	KRH00077	AT3G53990.1	21798944
AT3G53990.1	KRH49226	AT3G53990.1	21798944
AT3G53990.1	KRH62427	AT3G53990.1	21798944
AT3G53990.1	KRH75751	AT3G53990.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH62427	Soybean	endoplasmic reticulum	92.07	90.42
KRH49226	Soybean	cytosol	74.39	77.71
KRH00077	Soybean	cytosol	72.56	75.8
PGSC0003DMT400030606	Potato	cytosol	76.22	75.76
AT3G53990.1	Thale cress	cytosol	73.78	75.62
CDX73512	Canola	cytosol	71.95	75.16
Solyc09g011660.2.1	Tomato	cytosol	74.39	74.39
Bra007038.1-P	Field mustard	cytosol	71.34	74.05
Solyc09g011670.2.1	Tomato	cytosol, nucleus	73.78	73.78
CDY54032	Canola	plastid	15.24	73.53
Bra014852.1-P	Field mustard	cytosol	72.56	73.46
CDX76180	Canola	cytosol	72.56	73.46
VIT_08s0007g01430.t01	Wine grape	cytosol	73.17	73.17
Bra003163.1-P	Field mustard	cytosol	70.73	72.96
CDY07565	Canola	cytosol	70.73	72.96
CDX67580	Canola	cytosol	70.73	72.96
CDY13163	Canola	cytosol	71.95	72.84
PGSC0003DMT400049227	Potato	cytosol	66.46	65.66
GSMUA_AchrUn_...	Banana	cytosol	52.44	65.15
Solyc10g086670.1.1	Tomato	cytosol	65.85	65.06
PGSC0003DMT400030609	Potato	cytosol	23.78	62.9
KRH24723	Soybean	nucleus	62.8	62.8
KRH29731	Soybean	endoplasmic reticulum	62.8	62.8
GSMUA_Achr6P23610_001	Banana	cytosol	60.37	61.88
EES18332	Sorghum	cytosol	59.15	58.43
GSMUA_Achr3P17670_001	Banana	mitochondrion	65.85	58.38
TraesCS1B01G289700.1	Wheat	cytosol	58.54	57.83
TraesCS1D01G279800.1	Wheat	cytosol, golgi, unclear	58.54	57.83
TraesCS1A01G280700.1	Wheat	cytosol	57.32	56.63
EES03887	Sorghum	cytosol	52.44	54.43
KRH17289	Soybean	cytosol	54.88	54.22
Os01t0849600-01	Rice	cytosol, plastid	51.83	52.47
GSMUA_Achr9P03740_001	Banana	cytosol	52.44	52.12
KRH72936	Soybean	cytosol	45.12	50.34
Zm00001d012382_P002	Maize	cytosol	51.83	44.5
Os05t0453700-01	Rice	cytosol	51.22	44.44
KRH11952	Soybean	cytosol	42.68	42.68
HORVU3Hr1G085660.9	Barley	cytosol	48.78	41.45
Zm00001d038351_P004	Maize	cytosol	51.83	35.56
KRH36979	Soybean	endoplasmic reticulum, extracellular, vacuole	26.22	29.66

Protein Annotations

EMBL:ACUP02000476	EnsemblPlants:KRH75751	EnsemblPlantsGene:GLYMA_01G106200	Gene3D:3.40.50.620	GO:GO:0006950	GO:GO:0008150
InterPro:IPR014729	InterPro:Rossmann-like_a/b/a_fold	InterPro:Universal_stress_UspA	InterPro:UspA	PANTHER:PTHR31964	PANTHER:PTHR31964:SF23
PFAM:PF00582	PRINTS:PR01438	ProteinID:KRH75751	ProteinID:KRH75751.1	SUPFAM:SSF52402	UniParc:UPI00023BDF2A
UniProt:I1J728	MapMan:35.2	:	:	:	:

Description

hypothetical protein

Coordinates

chr1:-:35917805..35919549

Molecular Weight (calculated)

18376.2 Da

IEP (calculated)

5.831

GRAVY (calculated)

-0.193

Length

164 amino acids

Sequence
(BLAST)

001: MAKDRTIGVA LDFSKSSKNA LKWAFENLAD KGDTIYVIHI NPNSLDESRN KLWAKSGSPL IPLVEFREPE IMKKYDVEID IEVLDMLDTA SRQKEIHIVT
101: KIYWGDAREK LLDAIEDLKL DSLVMGSRGL STIQRIILGS VSNFVMTNAP CPVTIVKEPP SSSK

Best Arabidopsis Sequence Match ( AT3G53990.1 )
(BLAST)

001: MPKDRNIGIA MDFSESSKNA LKWAIENLAD KGDTIYIIHT LPLSGDESRN SLWFKSGSPL IPLAEFREPE IMEKYGVKTD IACLDMLDTG SRQKEVHVVT
101: KLYWGDAREK LVDAVKDLKL DSIVMGSRGL SALQRIIMGS VSSFVIQHAP CPVTVVKDNE

Arabidopsis Description

AT3G53990 protein [Source:UniProtKB/TrEMBL;Acc:Q9M328]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.