Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- nucleus 2
- cytosol 3
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Bra014852.1-P | Field mustard | cytosol | 100.0 | 100.0 |
| CDY13163 | Canola | cytosol | 99.38 | 99.38 |
| CDY54032 | Canola | plastid | 20.37 | 97.06 |
| CDX73512 | Canola | cytosol | 86.42 | 89.17 |
| CDX67580 | Canola | cytosol | 87.04 | 88.68 |
| CDY07565 | Canola | cytosol | 87.04 | 88.68 |
| AT3G53990.1 | Thale cress | cytosol | 87.04 | 88.12 |
| KRH75751 | Soybean | endoplasmic reticulum | 73.46 | 72.56 |
| KRH62427 | Soybean | endoplasmic reticulum | 71.6 | 69.46 |
| VIT_08s0007g01430.t01 | Wine grape | cytosol | 69.14 | 68.29 |
| KRH49226 | Soybean | cytosol | 64.81 | 66.88 |
| KRH00077 | Soybean | cytosol | 62.96 | 64.97 |
| GSMUA_AchrUn_... | Banana | cytosol | 48.77 | 59.85 |
| EES18332 | Sorghum | cytosol | 56.79 | 55.42 |
| CDY50688 | Canola | cytosol | 54.32 | 55.35 |
| CDY43136 | Canola | cytosol | 53.7 | 54.72 |
| GSMUA_Achr6P23610_001 | Banana | cytosol | 53.7 | 54.38 |
| TraesCS1A01G280700.1 | Wheat | cytosol | 54.32 | 53.01 |
| TraesCS1B01G289700.1 | Wheat | cytosol | 54.32 | 53.01 |
| TraesCS1D01G279800.1 | Wheat | cytosol, golgi, unclear | 54.32 | 53.01 |
| GSMUA_Achr3P17670_001 | Banana | mitochondrion | 59.26 | 51.89 |
| CDY54033 | Canola | cytosol | 30.86 | 51.55 |
| EES03887 | Sorghum | cytosol | 49.38 | 50.63 |
| Os01t0849600-01 | Rice | cytosol, plastid | 48.15 | 48.15 |
| GSMUA_Achr9P03740_001 | Banana | cytosol | 48.15 | 47.27 |
| CDY34988 | Canola | cytosol | 42.59 | 42.33 |
| Zm00001d012382_P002 | Maize | cytosol | 49.38 | 41.88 |
| Os05t0453700-01 | Rice | cytosol | 48.77 | 41.8 |
| CDY52729 | Canola | cytosol | 41.98 | 41.72 |
| CDX92110 | Canola | cytosol | 41.36 | 41.1 |
| CDX82383 | Canola | cytosol | 40.74 | 40.49 |
| CDX75899 | Canola | cytosol | 40.74 | 40.49 |
| HORVU3Hr1G085660.9 | Barley | cytosol | 46.3 | 38.86 |
| CDY69106 | Canola | cytosol | 17.28 | 36.84 |
| CDX95890 | Canola | cytosol | 41.36 | 34.36 |
| CDY67360 | Canola | cytosol | 14.2 | 34.33 |
| Zm00001d038351_P004 | Maize | cytosol | 49.38 | 33.47 |
| CDY44517 | Canola | cytosol | 13.58 | 32.84 |
Protein Annotations
| EnsemblPlants:CDX76180 | EnsemblPlantsGene:GSBRNA2T00126484001 | Gene3D:3.40.50.620 | GO:A0A078CH16 | GO:GO:0006950 | GO:GO:0008150 |
| InterPro:IPR014729 | InterPro:Rossmann-like_a/b/a_fold | InterPro:Universal_stress_UspA | InterPro:UspA | PANTHER:PTHR31964 | PANTHER:PTHR31964:SF23 |
| PFAM:PF00582 | PRINTS:PR01438 | ProteinID:CDX76180 | ProteinID:CDX76180.1 | SUPFAM:SSF52402 | UniParc:UPI00025450B2 |
| MapMan:35.2 | : | : | : | : | : |
Description
BnaA04g04440D
Coordinates
chrLK031806:+:1632436..1633873
Molecular Weight (calculated)
18022.7 Da
IEP (calculated)
5.029
GRAVY (calculated)
-0.135
Length
162 amino acids
Sequence
(BLAST)
(BLAST)
001: MPKDRKIGIA MDFSESSKNA LKWAFENLAD KGDTLYIIHT LPTSEVDSHN SAWLESGSPL IPLVEFREPE IMEKYGVKID IPVLDMLDTG SRQKEVHVVT
101: KLYWGDAREA LVDAVEDLKL DSIVMGSRGL SALRRIIMGS VSSFVIQHAP CPVTVVKDND SH
101: KLYWGDAREA LVDAVEDLKL DSIVMGSRGL SALRRIIMGS VSSFVIQHAP CPVTVVKDND SH
001: MPKDRNIGIA MDFSESSKNA LKWAIENLAD KGDTIYIIHT LPLSGDESRN SLWFKSGSPL IPLAEFREPE IMEKYGVKTD IACLDMLDTG SRQKEVHVVT
101: KLYWGDAREK LVDAVKDLKL DSIVMGSRGL SALQRIIMGS VSSFVIQHAP CPVTVVKDNE
101: KLYWGDAREK LVDAVKDLKL DSIVMGSRGL SALQRIIMGS VSSFVIQHAP CPVTVVKDNE
Arabidopsis Description
AT3G53990 protein [Source:UniProtKB/TrEMBL;Acc:Q9M328]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.